UHGV-0180931

Genome information

Genome length 30,003 bps

CDS count 44

Completeness 70.80% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180931
vOTU ID	vOTU-029193
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_571851
BioSample	SAMN06348197
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.39
Jumbo phage	No

Genome content
Genome length	30,003 bps
GC content	59.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.49%
Average CDS length	632.66 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180931_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180931_2	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0180931_2	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0180931_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0180931_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0180931_3	PHROG	phrog_3558	tail protein	tail
UHGV-0180931_3	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0180931_3	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0180931_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0180931_3	COG	COG4926	Phage-related protein	NA
UHGV-0180931_3	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0180931_4	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0180931_4	COG	COG5492	NA	NA
UHGV-0180931_5	PHROG	phrog_2310	NA	unknown function
UHGV-0180931_6	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0180931_6	PHROG	phrog_894	endolysin	lysis
UHGV-0180931_6	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0180931_6	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0180931_6	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0180931_6	COG	COG3108	NA	NA
UHGV-0180931_6	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0180931_7	PHROG	phrog_199	holin	lysis
UHGV-0180931_7	UniRef90	UniRef90_A0A2A6Z8T2	Holin	NA
UHGV-0180931_7	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0180931_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0180931_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0180931_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0180931_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0180931_8	PHROG	phrog_13712	holin	lysis
UHGV-0180931_8	eggNOG-mapper	397291.C804_01108	NA	NA
UHGV-0180931_8	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0180931_9	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0180931_9	PHROG	phrog_24603	NA	unknown function
UHGV-0180931_9	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-0180931_9	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0180931_9	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0180931_9	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0180931_9	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0180931_11	Structural annotation	PF12510	NA	NA
UHGV-0180931_12	PHROG	phrog_20016	NA	unknown function
UHGV-0180931_12	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0180931_12	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0180931_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180931_13	PHROG	phrog_16490	NA	unknown function
UHGV-0180931_13	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0180931_14	PHROG	phrog_22984	NA	unknown function
UHGV-0180931_15	PHROG	phrog_21718	NA	unknown function
UHGV-0180931_15	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180931_16	PHROG	phrog_3754	NA	unknown function
UHGV-0180931_16	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0180931_17	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0180931_17	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0180931_17	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0180931_17	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0180931_18	Structural annotation	PF07342	NA	NA
UHGV-0180931_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180931_19	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0180931_19	UniRef90	UniRef90_R5FKX4	Antirepressor	NA
UHGV-0180931_19	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0180931_19	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0180931_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180931_19	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0180931_19	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0180931_20	Structural annotation	PF04545, MF_00245, NF001074, COG2739	NA	NA
UHGV-0180931_23	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0180931_23	PHROG	phrog_366	tail fiber protein	tail
UHGV-0180931_23	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0180931_23	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0180931_23	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0180931_24	PHROG	phrog_1382	NA	unknown function
UHGV-0180931_24	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0180931_24	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0180931_24	Structural annotation	NF040910	NA	NA
UHGV-0180931_25	PHROG	phrog_9534	head protein	head and packaging
UHGV-0180931_25	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0180931_25	Structural annotation	PF21567	NA	NA
UHGV-0180931_26	PHROG	phrog_538	minor tail protein	tail
UHGV-0180931_26	UniRef90	UniRef90_UPI001C0C4E4F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0180931_26	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0180931_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0180931_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0180931_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0180931_27	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0180931_27	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0180931_27	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0180931_28	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0180931_28	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0180931_28	COG	COG1511	NA	NA
UHGV-0180931_29	Structural annotation	PF17318	NA	NA
UHGV-0180931_30	PHROG	phrog_1526	NA	unknown function
UHGV-0180931_30	UniRef90	UniRef90_F3MWB0	NA	NA
UHGV-0180931_30	eggNOG-mapper	875454.BAEW01000017_gene1589	NA	NA
UHGV-0180931_31	PHROG	phrog_117	major tail protein	tail
UHGV-0180931_31	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0180931_31	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0180931_31	COG	COG5492	NA	NA
UHGV-0180931_31	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0180931_32	PHROG	phrog_123	tail terminator	connector
UHGV-0180931_32	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0180931_32	Structural annotation	PF06141	NA	NA
UHGV-0180931_33	PHROG	phrog_387	neck protein	connector
UHGV-0180931_33	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0180931_33	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0180931_34	PHROG	phrog_501	head closure Hc1	connector
UHGV-0180931_34	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0180931_34	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0180931_34	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0180931_35	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0180931_35	UniRef90	UniRef90_A0A564SC88	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0180931_35	eggNOG-mapper	768726.HMPREF9178_1061	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0180931_35	Pfam	PF09355	NA	Phage_Gp19
UHGV-0180931_35	Structural annotation	PF09355	NA	NA
UHGV-0180931_37	PHROG	phrog_32396	NA	unknown function
UHGV-0180931_37	UniRef90	UniRef90_A0A564SB39	Phage capsid family protein	NA
UHGV-0180931_37	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0180931_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0180931_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0180931_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0180931_38	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0180931_38	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0180931_38	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0180931_38	Structural annotation	PF14265	NA	NA
UHGV-0180931_39	PHROG	phrog_17688	NA	unknown function
UHGV-0180931_39	UniRef90	UniRef90_A0A564SCG0	Phage Terminase	NA
UHGV-0180931_39	eggNOG-mapper	936375.HMPREF1152_0677	phage terminase, large subunit	NA
UHGV-0180931_39	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0180931_39	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0180931_41	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0180931_41	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0180931_41	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0180931_41	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0180931_41	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0180931_41	COG	COG2369	NA	NA
UHGV-0180931_41	Structural annotation	PF03496	NA	NA
UHGV-0180931_42	PHROG	phrog_104	portal protein	head and packaging
UHGV-0180931_42	UniRef90	UniRef90_A0A564SBV0	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180931_42	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180931_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180931_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0180931_43	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180931_43	UniRef90	UniRef90_A0A564SBG0	HNH endonuclease	NA
UHGV-0180931_43	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0180931_43	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0180931_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0180931_43	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0180931_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180931_44	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0180931_44	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0180931_44	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA