UHGV-0180980

Genome information

Genome length 40,497 bps

CDS count 64

Completeness 60.19% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180980
vOTU ID	vOTU-017530
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_577480
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	60.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.25
Jumbo phage	No

Genome content
Genome length	40,497 bps
GC content	67.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.42%
Average CDS length	586.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180980_1	KOfam	K03648	UNG, UDG; uracil-DNA glycosylase [EC:3.2.2.27]	NA
UHGV-0180980_1	PHROG	phrog_12143	NA	unknown function
UHGV-0180980_1	UniRef90	UniRef90_C0W450	Uracil-DNA glycosylase	NA
UHGV-0180980_1	eggNOG-mapper	1284679.HMPREF1626_11345	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine	NA
UHGV-0180980_1	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0180980_1	NCBIFam	NF003588.0	uracil-DNA glycosylase	NA
UHGV-0180980_1	COG	COG0692	Uracil-DNA glycosylase	NA
UHGV-0180980_1	HAMAP	MF_00148	Uracil-DNA glycosylase [ung]	NA
UHGV-0180980_1	Structural annotation	MF_00148, NF003589, COG0692	NA	NA
UHGV-0180980_2	UniRef90	UniRef90_A0A7L5AXP0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0180980_2	eggNOG-mapper	525246.HMPREF0058_0717	NA	NA
UHGV-0180980_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0180980_3	PHROG	phrog_8245	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0180980_3	UniRef90	UniRef90_UPI001557C744	helix-turn-helix transcriptional regulator	NA
UHGV-0180980_3	eggNOG-mapper	525246.HMPREF0058_0718	NA	NA
UHGV-0180980_3	Structural annotation	PF02796, PF18066, TIGR03879	NA	NA
UHGV-0180980_4	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0180980_4	UniRef90	UniRef90_A0A133ZAU1	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0180980_4	eggNOG-mapper	525246.HMPREF0058_0719	NA	NA
UHGV-0180980_4	Structural annotation	PF07927	NA	NA
UHGV-0180980_5	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180980_5	UniRef90	UniRef90_UPI00115DA6C1	helix-turn-helix domain-containing protein	NA
UHGV-0180980_5	eggNOG-mapper	471856.Jden_2129	NA	NA
UHGV-0180980_6	UniRef90	UniRef90_UPI001E636DAB	helix-turn-helix transcriptional regulator	NA
UHGV-0180980_6	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-0180980_6	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-0180980_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180980_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0180980_7	UniRef90	UniRef90_C0W4C7	Phage antirepressor protein	NA
UHGV-0180980_7	eggNOG-mapper	525246.HMPREF0058_0721	BRO family, N-terminal domain	NA
UHGV-0180980_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180980_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180980_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0180980_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0180980_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0180980_15	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180980_15	UniRef90	UniRef90_UPI001F3A4FA2	recombinase RecT	NA
UHGV-0180980_15	eggNOG-mapper	525268.HMPREF0308_2040	NA	NA
UHGV-0180980_15	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0180980_18	eggNOG-mapper	1125718.HMPREF1318_0887	NA	NA
UHGV-0180980_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180980_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180980_21	UniRef90	UniRef90_UPI001C57A7BA	DNA cytosine methyltransferase	NA
UHGV-0180980_21	eggNOG-mapper	439809.A5YK40_9CAUD	C-5 cytosine-specific DNA methylase	NA
UHGV-0180980_21	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0180980_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180980_21	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0180980_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0180980_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0180980_22	UniRef90	UniRef90_C0W5T7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0180980_22	eggNOG-mapper	525246.HMPREF0058_1231	NA	NA
UHGV-0180980_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0180980_24	PHROG	phrog_22834	NA	unknown function
UHGV-0180980_24	eggNOG-mapper	1500890.JQNL01000001_gene3284	NA	NA
UHGV-0180980_24	COG	COG3756	NA	NA
UHGV-0180980_24	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0180980_26	eggNOG-mapper	521393.JH806633_gene1252	NA	NA
UHGV-0180980_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0180980_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0180980_27	UniRef90	UniRef90_UPI001E29767C	single-stranded DNA-binding protein	NA
UHGV-0180980_27	eggNOG-mapper	1121360.AUAQ01000011_gene12	Single-stranded DNA-binding protein	NA
UHGV-0180980_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180980_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0180980_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180980_27	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0180980_31	PHROG	phrog_464	NA	unknown function
UHGV-0180980_31	UniRef90	UniRef90_UPI001F315DE4	NA	NA
UHGV-0180980_31	eggNOG-mapper	47716.JOFH01000001_gene2447	NA	NA
UHGV-0180980_31	Pfam	PF14216	NA	DUF4326
UHGV-0180980_31	Structural annotation	PF14216	NA	NA
UHGV-0180980_33	eggNOG-mapper	525246.HMPREF0058_0738	NA	NA
UHGV-0180980_33	Structural annotation	NF033787	NA	NA
UHGV-0180980_36	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0180980_36	UniRef90	UniRef90_A0A430JMA1	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0180980_36	eggNOG-mapper	640132.Srot_2112	sulfate reduction	NA
UHGV-0180980_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0180980_36	Structural annotation	PF01507, MF_00063, TIGR02057, COG0175	NA	NA
UHGV-0180980_37	eggNOG-mapper	446462.Amir_3266	NA	NA
UHGV-0180980_38	PHROG	phrog_645	Rnase E	DNA, RNA and nucleotide metabolism
UHGV-0180980_38	UniRef90	UniRef90_A0A7T0KI49	Sigma70_r4_2 domain-containing protein	NA
UHGV-0180980_38	eggNOG-mapper	1206739.BAGJ01000262_gene2947	Homeodomain-like domain	NA
UHGV-0180980_38	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0180980_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180980_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0180980_39	UniRef90	UniRef90_UPI00189BD5EB	PBSX family phage terminase large subunit	NA
UHGV-0180980_39	eggNOG-mapper	1120917.AQXM01000062_gene1954	Terminase-like family	NA
UHGV-0180980_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0180980_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180980_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180980_39	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0180980_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180980_40	UniRef90	UniRef90_UPI001898C09B	phage portal protein	NA
UHGV-0180980_40	eggNOG-mapper	227882.SAV_5520	NA	NA
UHGV-0180980_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180980_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-0180980_41	PHROG	phrog_12049	head morphogenesis	head and packaging
UHGV-0180980_41	UniRef90	UniRef90_A0A161XD11	Phage minor capsid protein 2	NA
UHGV-0180980_41	eggNOG-mapper	67257.JODR01000001_gene976	Phage minor capsid protein 2	NA
UHGV-0180980_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180980_41	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0180980_42	PHROG	phrog_8952	NA	unknown function
UHGV-0180980_42	UniRef90	UniRef90_A0A6M9Z4L8	Scaffolding protein	NA
UHGV-0180980_42	eggNOG-mapper	66875.JODY01000010_gene1618	NA	NA
UHGV-0180980_43	PHROG	phrog_544	major head protein	head and packaging
UHGV-0180980_43	UniRef90	UniRef90_UPI00189C0B3A	N4-gp56 family major capsid protein	NA
UHGV-0180980_43	eggNOG-mapper	66875.JODY01000010_gene1619	NA	NA
UHGV-0180980_43	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0180980_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0180980_46	PHROG	phrog_3881	head-tail connector protein	connector
UHGV-0180980_46	eggNOG-mapper	1121926.AXWO01000004_gene1156	NA	NA
UHGV-0180980_46	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0180980_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180980_47	UniRef90	UniRef90_UPI001E33A1FB	HK97 gp10 family phage protein	NA
UHGV-0180980_47	eggNOG-mapper	1203190.CAJP01000005_gene1673	NA	NA
UHGV-0180980_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0180980_47	Structural annotation	PF11114, TIGR01725, COG5005	NA	NA
UHGV-0180980_48	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0180980_48	UniRef90	UniRef90_UPI001898C0E4	minor capsid protein	NA
UHGV-0180980_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0180980_49	PHROG	phrog_3884	major tail protein	tail
UHGV-0180980_49	UniRef90	UniRef90_A0A1Q4AZP4	IPT/TIG domain-containing protein	NA
UHGV-0180980_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180980_50	PHROG	phrog_3860	tail assembly chaperone	tail
UHGV-0180980_52	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0180980_52	UniRef90	UniRef90_UPI001E3BE0D8	tape measure protein	NA
UHGV-0180980_52	eggNOG-mapper	1120933.ATUY01000002_gene99	phage tail tape measure protein	NA
UHGV-0180980_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0180980_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0180980_52	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180980_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180980_53	Structural annotation	PF05939, TIGR01633, COG5437	NA	NA
UHGV-0180980_54	PHROG	phrog_1887	tail protein	tail
UHGV-0180980_54	UniRef90	UniRef90_UPI001891F87A	NA	NA
UHGV-0180980_54	eggNOG-mapper	521393.JH806633_gene1287	NA	NA
UHGV-0180980_54	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0180980_55	COG	COG4926	Phage-related protein	NA
UHGV-0180980_56	eggNOG-mapper	521393.JH806633_gene1289	NA	NA
UHGV-0180980_56	Structural annotation	PF00386, NF033147, COG4935	NA	NA
UHGV-0180980_57	PHROG	phrog_18593	NA	unknown function
UHGV-0180980_57	UniRef90	UniRef90_A0A430JLJ0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0180980_57	eggNOG-mapper	552398.HMPREF0866_04507	NA	NA
UHGV-0180980_57	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0180980_59	PHROG	phrog_21825	endolysin	lysis
UHGV-0180980_59	UniRef90	UniRef90_UPI00189AB072	peptidoglycan-binding protein	NA
UHGV-0180980_59	eggNOG-mapper	479437.Elen_2649	CHAP domain	NA
UHGV-0180980_59	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180980_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0180980_59	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0180980_59	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0180980_60	PHROG	phrog_443	holin	lysis
UHGV-0180980_60	UniRef90	UniRef90_UPI001896FFB4	holin	NA
UHGV-0180980_60	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-0180980_60	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0180980_60	Structural annotation	PF16945	NA	NA
UHGV-0180980_62	PHROG	phrog_27679	NA	unknown function
UHGV-0180980_64	KOfam	K14059	int; integrase	NA
UHGV-0180980_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0180980_64	UniRef90	UniRef90_A0A7L5AXJ8	Tyr recombinase domain-containing protein	NA
UHGV-0180980_64	eggNOG-mapper	471856.Jden_2126	DNA integration	NA
UHGV-0180980_64	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0180980_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180980_64	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180980_64	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA