UHGV-0180995

Genome information

Genome length 56,036 bps

CDS count 102

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180995
vOTU ID	vOTU-006627
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589808
BioSample	SAMN09781695
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.17
Jumbo phage	No

Genome content
Genome length	56,036 bps
GC content	40.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	88.45%
Average CDS length	489.56 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180995_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0180995_1	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0180995_1	AcrCatalog	cluster_47493	NA	NA
UHGV-0180995_1	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0180995_2	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0180995_2	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0180995_2	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-0180995_2	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0180995_2	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0180995_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0180995_2	COG	COG0863	DNA modification methylase	NA
UHGV-0180995_2	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0180995_4	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0180995_6	Structural annotation	PF11184	NA	NA
UHGV-0180995_7	PHROG	phrog_874	NA	unknown function
UHGV-0180995_7	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0180995_7	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0180995_7	Pfam	PF04266	ASCH domain	ASCH
UHGV-0180995_7	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0180995_9	PHROG	phrog_20593	NA	unknown function
UHGV-0180995_11	Structural annotation	PF14282	NA	NA
UHGV-0180995_12	PHROG	phrog_8684	NA	unknown function
UHGV-0180995_12	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-0180995_12	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0180995_12	Pfam	PF09643	YopX protein	YopX
UHGV-0180995_12	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0180995_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0180995_14	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0180995_15	PHROG	phrog_21026	NA	unknown function
UHGV-0180995_18	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0180995_18	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0180995_18	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0180995_18	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0180995_18	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0180995_18	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0180995_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0180995_18	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0180995_19	PHROG	phrog_11769	NA	unknown function
UHGV-0180995_19	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0180995_19	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0180995_19	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0180995_19	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0180995_19	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0180995_20	PHROG	phrog_19106	NA	unknown function
UHGV-0180995_20	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0180995_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0180995_20	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0180995_20	Structural annotation	TIGR01453	NA	NA
UHGV-0180995_22	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0180995_22	Structural annotation	PF17457	NA	NA
UHGV-0180995_23	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0180995_23	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0180995_23	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0180995_23	eggNOG-mapper	658655.HMPREF0988_00882	Metallo-beta-lactamase superfamily	NA
UHGV-0180995_23	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0180995_23	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0180995_24	eggNOG-mapper	658655.HMPREF0988_00883	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0180995_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0180995_26	PHROG	phrog_25456	NA	unknown function
UHGV-0180995_28	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180995_28	UniRef90	UniRef90_R9KLP4	Phage recombination protein Bet	NA
UHGV-0180995_28	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0180995_28	Pfam	PF03837	RecT family	RecT
UHGV-0180995_28	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0180995_28	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0180995_28	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0180995_30	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0180995_33	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0180995_33	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0180995_33	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0180995_33	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0180995_33	Pfam	PF13476	AAA domain	AAA_23
UHGV-0180995_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0180995_33	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0180995_35	PHROG	phrog_26861	NA	unknown function
UHGV-0180995_35	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0180995_35	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0180995_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0180995_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0180995_35	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0180995_37	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0180995_37	PHROG	phrog_19890	NA	unknown function
UHGV-0180995_37	UniRef90	UniRef90_A0A396AHW9	SLT domain-containing protein	NA
UHGV-0180995_37	eggNOG-mapper	397290.C810_01448	lytic transglycosylase activity	NA
UHGV-0180995_37	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0180995_37	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0180995_37	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0180995_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0180995_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0180995_39	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-0180995_39	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0180995_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0180995_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0180995_39	COG	COG3617	Prophage antirepressor	NA
UHGV-0180995_39	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0180995_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180995_40	UniRef90	UniRef90_UPI001D081A91	helix-turn-helix transcriptional regulator	NA
UHGV-0180995_40	eggNOG-mapper	1203606.HMPREF1526_00303	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180995_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180995_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180995_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0180995_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0180995_41	UniRef90	UniRef90_A0A416G2G1	XRE family transcriptional regulator	NA
UHGV-0180995_41	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0180995_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0180995_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0180995_41	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0180995_45	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0180995_45	Structural annotation	NF040910	NA	NA
UHGV-0180995_48	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0180995_48	Structural annotation	PF02839	NA	NA
UHGV-0180995_49	PHROG	phrog_17196	kinase	other
UHGV-0180995_49	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0180995_49	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0180995_50	PHROG	phrog_18190	NA	unknown function
UHGV-0180995_50	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0180995_50	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0180995_50	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0180995_50	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0180995_51	PHROG	phrog_1194	NA	unknown function
UHGV-0180995_51	Pfam	PF20458	NA	DUF6711
UHGV-0180995_51	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0180995_52	PHROG	phrog_9700	NA	unknown function
UHGV-0180995_52	eggNOG-mapper	626418.bglu_1g20650	NA	NA
UHGV-0180995_52	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0180995_52	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0180995_53	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180995_53	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0180995_53	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0180995_54	PHROG	phrog_14030	NA	unknown function
UHGV-0180995_54	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0180995_54	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0180995_54	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0180995_57	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0180995_57	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0180995_58	Structural annotation	PF05657	NA	NA
UHGV-0180995_59	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0180995_59	AcrCatalog	cluster_24841	NA	NA
UHGV-0180995_61	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0180995_62	PHROG	phrog_443	holin	lysis
UHGV-0180995_62	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0180995_62	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0180995_62	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0180995_62	Structural annotation	PF16945	NA	NA
UHGV-0180995_63	PHROG	phrog_4105	NA	unknown function
UHGV-0180995_63	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0180995_64	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0180995_65	PHROG	phrog_774	NA	unknown function
UHGV-0180995_65	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0180995_66	Structural annotation	PF21169	NA	NA
UHGV-0180995_67	PHROG	phrog_29	major head protein	head and packaging
UHGV-0180995_67	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0180995_67	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0180995_67	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0180995_67	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0180995_68	PHROG	phrog_909	major head protein	head and packaging
UHGV-0180995_68	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0180995_69	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0180995_70	PHROG	phrog_64	portal protein	head and packaging
UHGV-0180995_70	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0180995_70	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0180995_70	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0180995_70	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0180995_71	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0180995_71	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0180995_71	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0180995_71	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0180995_71	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0180995_72	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0180995_72	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0180995_72	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0180995_72	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0180995_72	COG	COG5410	NA	NA
UHGV-0180995_72	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0180995_77	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0180995_78	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0180995_80	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0180995_80	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0180995_80	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0180995_80	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0180995_80	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0180995_80	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0180995_82	Structural annotation	PF04606	NA	NA
UHGV-0180995_83	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0180995_85	UniRef90	UniRef90_A0A2N5NVL9	Transcriptional regulator	NA
UHGV-0180995_85	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180995_85	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180995_90	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0180995_91	UniRef90	UniRef90_A0A7X5I8Q7	Fork-head domain-containing protein	NA
UHGV-0180995_94	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0180995_94	Structural annotation	PF13058	NA	NA
UHGV-0180995_95	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0180995_96	PHROG	phrog_20016	NA	unknown function
UHGV-0180995_96	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0180995_96	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0180995_96	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0180995_97	PHROG	phrog_16490	NA	unknown function
UHGV-0180995_97	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0180995_98	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0180995_99	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0180995_101	KOfam	K14059	int; integrase	NA
UHGV-0180995_101	PHROG	phrog_1	integrase	integration and excision
UHGV-0180995_101	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0180995_101	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0180995_101	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0180995_101	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0180995_101	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0180995_102	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0180995_102	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0180995_102	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA