UHGV-0180999

Genome information

Genome length 41,403 bps

CDS count 67

Completeness 91.74% (high-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0180999
vOTU ID	vOTU-059586
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589771
BioSample	SAMN09781684
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.74% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.37
Jumbo phage	No

Genome content
Genome length	41,403 bps
GC content	41.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.16%
Average CDS length	562.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0180999_1	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0180999_1	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0180999_2	UniRef90	UniRef90_UPI001001A229	NA	NA
UHGV-0180999_2	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0180999_3	PHROG	phrog_1129	holin	lysis
UHGV-0180999_3	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0180999_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0180999_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0180999_3	Structural annotation	PF06946	NA	NA
UHGV-0180999_4	PHROG	phrog_3366	NA	unknown function
UHGV-0180999_4	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0180999_4	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0180999_5	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0180999_5	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0180999_5	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0180999_5	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0180999_5	Structural annotation	PF11114	NA	NA
UHGV-0180999_6	PHROG	phrog_3266	tail completion	connector
UHGV-0180999_6	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0180999_6	Structural annotation	PF12691	NA	NA
UHGV-0180999_7	PHROG	phrog_3099	NA	unknown function
UHGV-0180999_7	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0180999_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0180999_8	PHROG	phrog_11299	NA	unknown function
UHGV-0180999_8	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0180999_8	Structural annotation	PF10666	NA	NA
UHGV-0180999_9	PHROG	phrog_706	NA	unknown function
UHGV-0180999_9	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0180999_9	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0180999_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0180999_9	Structural annotation	PF06854	NA	NA
UHGV-0180999_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0180999_10	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0180999_10	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0180999_10	COG	COG1511	NA	NA
UHGV-0180999_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0180999_11	PHROG	phrog_1194	NA	unknown function
UHGV-0180999_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0180999_12	PHROG	phrog_6616	tail protein	tail
UHGV-0180999_12	UniRef90	UniRef90_A0A395X7B3	Peptidase S74 domain-containing protein	NA
UHGV-0180999_12	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0180999_12	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0180999_13	Structural annotation	PF14400, NF012201	NA	NA
UHGV-0180999_14	PHROG	phrog_38078	NA	unknown function
UHGV-0180999_14	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0180999_14	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0180999_14	Pfam	PF05257	CHAP domain	CHAP
UHGV-0180999_14	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0180999_14	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0180999_15	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0180999_15	PHROG	phrog_95	integrase	integration and excision
UHGV-0180999_15	UniRef90	UniRef90_A0A412ELC2	Recombinase family protein	NA
UHGV-0180999_15	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0180999_15	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0180999_15	Pfam	PF07508	Recombinase	Recombinase
UHGV-0180999_15	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0180999_15	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0180999_15	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0180999_16	PHROG	phrog_4431	NA	unknown function
UHGV-0180999_16	UniRef90	UniRef90_A0A412ELU3	SHOCT domain-containing protein	NA
UHGV-0180999_16	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-0180999_16	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0180999_18	UniRef90	UniRef90_A0A4Q5ERT3	XRE family transcriptional regulator	NA
UHGV-0180999_18	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180999_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0180999_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0180999_18	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0180999_24	Structural annotation	PF13601, MF_01819, NF038251, COG1846	NA	NA
UHGV-0180999_26	AcrCatalog	cluster_17974	NA	NA
UHGV-0180999_28	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0180999_30	Structural annotation	NF001645	NA	NA
UHGV-0180999_31	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0180999_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0180999_32	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0180999_32	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0180999_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-0180999_32	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0180999_33	PHROG	phrog_18107	NA	unknown function
UHGV-0180999_33	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0180999_33	Structural annotation	PF05037	NA	NA
UHGV-0180999_34	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0180999_34	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0180999_34	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0180999_34	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0180999_34	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0180999_35	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0180999_35	PHROG	phrog_11992	NA	unknown function
UHGV-0180999_35	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0180999_35	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0180999_35	PADLOC	drt-UG29	DRT	DRT
UHGV-0180999_35	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0180999_35	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0180999_35	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0180999_36	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0180999_36	UniRef90	UniRef90_A0A412EL97	NA	NA
UHGV-0180999_36	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0180999_36	Pfam	PF06048	NA	DUF927
UHGV-0180999_36	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0180999_36	COG	COG5519	NA	NA
UHGV-0180999_36	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0180999_38	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0180999_38	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0180999_39	UniRef90	UniRef90_A0A412ELN5	LexA_DNA_bind domain-containing protein	NA
UHGV-0180999_39	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-0180999_39	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0180999_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0180999_39	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0180999_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0180999_41	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0180999_41	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0180999_41	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0180999_41	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0180999_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0180999_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0180999_41	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0180999_42	AcrCatalog	cluster_11670	NA	NA
UHGV-0180999_43	eggNOG-mapper	1304866.K413DRAFT_4602	NA	NA
UHGV-0180999_43	Structural annotation	PF02701, TIGR03655, COG3677	NA	NA
UHGV-0180999_44	PHROG	phrog_20593	NA	unknown function
UHGV-0180999_45	PHROG	phrog_20593	NA	unknown function
UHGV-0180999_49	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0180999_49	Structural annotation	PF10781, NF007981	NA	NA
UHGV-0180999_50	PHROG	phrog_1455	NA	unknown function
UHGV-0180999_50	eggNOG-mapper	1280692.AUJL01000009_gene2996	NA	NA
UHGV-0180999_50	Pfam	PF21793	NA	DUF6877
UHGV-0180999_50	Structural annotation	PF21793	NA	NA
UHGV-0180999_52	UniRef90	UniRef90_E9RTH1	HTH luxR-type domain-containing protein	NA
UHGV-0180999_52	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0180999_53	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0180999_53	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0180999_53	Structural annotation	PF08965, NF040522, COG2944	NA	NA
UHGV-0180999_54	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0180999_54	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0180999_54	AcrCatalog	cluster_32378	NA	NA
UHGV-0180999_55	PHROG	phrog_33130	NA	unknown function
UHGV-0180999_55	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0180999_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0180999_56	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0180999_56	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0180999_56	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0180999_56	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0180999_56	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0180999_56	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0180999_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0180999_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0180999_56	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0180999_58	PHROG	phrog_533	portal protein	head and packaging
UHGV-0180999_58	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0180999_58	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0180999_58	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0180999_59	PHROG	phrog_16164	NA	unknown function
UHGV-0180999_59	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0180999_61	PHROG	phrog_134	NA	unknown function
UHGV-0180999_61	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0180999_61	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0180999_61	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0180999_62	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0180999_62	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0180999_62	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0180999_62	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0180999_62	COG	COG2369	NA	NA
UHGV-0180999_62	Structural annotation	PF06152	NA	NA
UHGV-0180999_63	PHROG	phrog_3754	NA	unknown function
UHGV-0180999_63	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0180999_64	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0180999_64	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0180999_65	PHROG	phrog_21718	NA	unknown function
UHGV-0180999_65	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0180999_66	PHROG	phrog_22984	NA	unknown function
UHGV-0180999_67	PHROG	phrog_16490	NA	unknown function
UHGV-0180999_67	eggNOG-mapper	397290.C810_01328	NA	NA