UHGV-0181005

Genome information

Genome length 34,001 bps

CDS count 56

Completeness 98.36% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181005
vOTU ID	vOTU-066189
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_576954
BioSample	SAMN07501320
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.16
Jumbo phage	No

Genome content
Genome length	34,001 bps
GC content	37.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.65%
Average CDS length	566.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181005_1	eggNOG-mapper	1235793.C809_00526	NA	NA
UHGV-0181005_2	KOfam	K14059	int; integrase	NA
UHGV-0181005_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0181005_2	UniRef90	UniRef90_R5JMF6	Site-specific recombinase phage integrase family	NA
UHGV-0181005_2	eggNOG-mapper	596315.HMPREF0634_0158	Belongs to the 'phage' integrase family	NA
UHGV-0181005_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181005_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181005_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0181005_3	PHROG	phrog_87	metallo-protease	other
UHGV-0181005_3	UniRef90	UniRef90_A0A1I7IAT0	Peptidase_M78 domain-containing protein	NA
UHGV-0181005_3	eggNOG-mapper	1035196.HMPREF9998_01767	IrrE N-terminal-like domain	NA
UHGV-0181005_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0181005_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0181005_4	UniRef90	UniRef90_A0A7X8VEH6	NA	NA
UHGV-0181005_4	eggNOG-mapper	585501.HMPREF6123_1677	membrane	NA
UHGV-0181005_4	Pfam	PF05987	NA	DUF898
UHGV-0181005_4	COG	COG4269	NA	NA
UHGV-0181005_4	Structural annotation	PF20403	NA	NA
UHGV-0181005_5	PHROG	phrog_6600	NA	unknown function
UHGV-0181005_5	eggNOG-mapper	411471.SUBVAR_05817	NA	NA
UHGV-0181005_5	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0181005_5	Structural annotation	PF08797	NA	NA
UHGV-0181005_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0181005_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181005_8	UniRef90	UniRef90_R5JME7	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0181005_8	eggNOG-mapper	596315.HMPREF0634_0379	PFAM Helix-turn-helix	NA
UHGV-0181005_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0181005_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181005_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0181005_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181005_9	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0181005_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181005_9	UniRef90	UniRef90_A0A1I2E9H4	Helix-turn-helix	NA
UHGV-0181005_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181005_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181005_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181005_14	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0181005_14	UniRef90	UniRef90_R5JBB7	Prophage LambdaCh01 transcriptional regulator family protein	NA
UHGV-0181005_14	eggNOG-mapper	596315.HMPREF0634_0382	peptidyl-tyrosine sulfation	NA
UHGV-0181005_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181005_14	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0181005_14	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0181005_15	PHROG	phrog_6058	NA	unknown function
UHGV-0181005_15	UniRef90	UniRef90_R5J5Y6	Modification methylase SinI	NA
UHGV-0181005_15	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-0181005_15	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0181005_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181005_18	UniRef90	UniRef90_R5J6G5	Conserved domain protein	NA
UHGV-0181005_18	eggNOG-mapper	596315.HMPREF0634_0383	DnaD domain protein	NA
UHGV-0181005_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0181005_18	Structural annotation	TIGR01610	NA	NA
UHGV-0181005_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0181005_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0181005_19	UniRef90	UniRef90_R5JBB2	DNA helicase	NA
UHGV-0181005_19	eggNOG-mapper	596315.HMPREF0634_0384	DNA helicase	NA
UHGV-0181005_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0181005_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0181005_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0181005_19	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0181005_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181005_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181005_23	UniRef90	UniRef90_R5JB91	Single-stranded DNA-binding protein	NA
UHGV-0181005_23	eggNOG-mapper	596315.HMPREF0634_0385	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0181005_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181005_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181005_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181005_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181005_23	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0181005_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181005_25	UniRef90	UniRef90_R5JLP6	Sigma-70 region 4	NA
UHGV-0181005_26	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0181005_26	PHROG	phrog_216	integrase	integration and excision
UHGV-0181005_26	UniRef90	UniRef90_R5JB85	Site-specific recombinase phage integrase family	NA
UHGV-0181005_26	eggNOG-mapper	596329.HMPREF0631_1365	Site-specific recombinase, phage integrase family	NA
UHGV-0181005_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181005_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181005_26	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0181005_27	PHROG	phrog_3896	NA	unknown function
UHGV-0181005_28	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0181005_28	UniRef90	UniRef90_UPI0016246E12	ORF6C domain-containing protein	NA
UHGV-0181005_28	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0181005_28	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181005_28	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0181005_28	COG	COG3617	Prophage antirepressor	NA
UHGV-0181005_28	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0181005_30	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181005_30	UniRef90	UniRef90_R5JMA8	HNH endonuclease domain protein	NA
UHGV-0181005_30	eggNOG-mapper	1321784.HMPREF1987_01066	HNH endonuclease domain protein	NA
UHGV-0181005_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181005_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181005_30	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0181005_31	PHROG	phrog_104	portal protein	head and packaging
UHGV-0181005_31	UniRef90	UniRef90_A0A8A6P655	Phage portal protein	NA
UHGV-0181005_31	eggNOG-mapper	1321784.HMPREF1987_01067	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0181005_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0181005_32	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0181005_32	UniRef90	UniRef90_UPI000CF92673	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0181005_32	eggNOG-mapper	875454.BAEW01000017_gene1600	NA	NA
UHGV-0181005_32	Structural annotation	PF14076	NA	NA
UHGV-0181005_33	eggNOG-mapper	699246.HMPREF0868_0550	NA	NA
UHGV-0181005_34	PHROG	phrog_17688	NA	unknown function
UHGV-0181005_34	UniRef90	UniRef90_R5JB72	Phage terminase	NA
UHGV-0181005_34	eggNOG-mapper	1423775.BAMN01000011_gene606	phage terminase, large subunit	NA
UHGV-0181005_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181005_34	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0181005_35	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0181005_35	UniRef90	UniRef90_A0A7D4FMA1	NA	NA
UHGV-0181005_35	eggNOG-mapper	1321784.HMPREF1987_01072	NA	NA
UHGV-0181005_35	Pfam	PF14265	NA	DUF4355
UHGV-0181005_35	Structural annotation	PF14265	NA	NA
UHGV-0181005_36	PHROG	phrog_32396	NA	unknown function
UHGV-0181005_36	UniRef90	UniRef90_R5JLM7	Phage capsid family	NA
UHGV-0181005_36	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0181005_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181005_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181005_37	PHROG	phrog_1539	Arc-like repressor	transcription regulation
UHGV-0181005_37	UniRef90	UniRef90_G9X210	Endonuc-dimeris domain-containing protein	NA
UHGV-0181005_37	Structural annotation	PF09124	NA	NA
UHGV-0181005_38	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0181005_38	UniRef90	UniRef90_R5JB67	NA	NA
UHGV-0181005_38	eggNOG-mapper	908337.HMPREF9257_0536	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0181005_38	Pfam	PF09355	NA	Phage_Gp19
UHGV-0181005_38	Structural annotation	PF09355	NA	NA
UHGV-0181005_39	PHROG	phrog_501	head closure Hc1	connector
UHGV-0181005_39	UniRef90	UniRef90_R5J5U6	ORF34	NA
UHGV-0181005_39	eggNOG-mapper	1121864.OMO_02155	NA	NA
UHGV-0181005_39	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0181005_40	PHROG	phrog_387	neck protein	connector
UHGV-0181005_40	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-0181005_40	eggNOG-mapper	12390.Q77MU9_9CAUD	NA	NA
UHGV-0181005_41	PHROG	phrog_123	tail terminator	connector
UHGV-0181005_41	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0181005_41	eggNOG-mapper	1321784.HMPREF1987_01078	NA	NA
UHGV-0181005_41	Structural annotation	PF06141	NA	NA
UHGV-0181005_42	PHROG	phrog_117	major tail protein	tail
UHGV-0181005_42	UniRef90	UniRef90_UPI0016240E52	phage tail protein	NA
UHGV-0181005_42	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0181005_42	COG	COG5492	NA	NA
UHGV-0181005_42	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0181005_43	PHROG	phrog_1526	NA	unknown function
UHGV-0181005_43	eggNOG-mapper	879308.HMPREF9130_1240	NA	NA
UHGV-0181005_44	PHROG	phrog_1633	NA	unknown function
UHGV-0181005_44	UniRef90	UniRef90_UPI0016252BC4	NA	NA
UHGV-0181005_44	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0181005_44	Pfam	PF17318	NA	DUF5361
UHGV-0181005_44	Structural annotation	PF17318	NA	NA
UHGV-0181005_45	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181005_45	eggNOG-mapper	1321820.HMPREF1983_00924	Phage tail tape measure protein	NA
UHGV-0181005_45	COG	COG1511	NA	NA
UHGV-0181005_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181005_46	UniRef90	UniRef90_UPI0016288C5C	phage tail family protein	NA
UHGV-0181005_46	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0181005_46	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0181005_47	PHROG	phrog_9886	NA	unknown function
UHGV-0181005_47	UniRef90	UniRef90_A0A135YZ55	Phage minor structural protein	NA
UHGV-0181005_47	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0181005_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181005_47	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0181005_47	COG	COG4926	Phage-related protein	NA
UHGV-0181005_47	Structural annotation	PF06605, PF21466, PF21683, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0181005_48	PHROG	phrog_34633	NA	unknown function
UHGV-0181005_49	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0181005_49	PHROG	phrog_819	tail protein	tail
UHGV-0181005_49	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0181005_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0181005_51	PHROG	phrog_4105	NA	unknown function
UHGV-0181005_51	eggNOG-mapper	1035196.HMPREF9998_01696	NA	NA
UHGV-0181005_52	UniRef90	UniRef90_A0A379CH30	Holin, phage phi LC3 family	NA
UHGV-0181005_52	eggNOG-mapper	1035196.HMPREF9998_01695	COG5546 Small integral membrane protein	NA
UHGV-0181005_52	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0181005_52	COG	COG5546	NA	NA
UHGV-0181005_53	KOfam	K07273	acm; lysozyme	NA
UHGV-0181005_53	PHROG	phrog_6745	endolysin	lysis
UHGV-0181005_53	UniRef90	UniRef90_E0E215	Glycosyl hydrolase family 25	NA
UHGV-0181005_53	eggNOG-mapper	596315.HMPREF0634_0233	Glycosyl hydrolases family 25	NA
UHGV-0181005_53	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0181005_53	Pfam	PF05257	CHAP domain	CHAP
UHGV-0181005_53	COG	COG1388	LysM repeat	NA
UHGV-0181005_55	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0181005_55	UniRef90	UniRef90_A0A2P8EGY4	Prophage antirepressor-like protein	NA
UHGV-0181005_55	eggNOG-mapper	1035196.HMPREF9998_00745	BRO family, N-terminal domain	NA
UHGV-0181005_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181005_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0181005_56	UniRef90	UniRef90_K1SJV7	Phage DNA replication protein (Predicted replicative helicase loader)	NA
UHGV-0181005_56	eggNOG-mapper	1035196.HMPREF9998_00746	NA	NA
UHGV-0181005_56	COG	COG1484	DNA replication protein DnaC	NA