UHGV-0181017

Genome information

Genome length 35,763 bps

CDS count 59

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181017
vOTU ID	vOTU-006511
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_589202
BioSample	SAMN09781775
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.07
Jumbo phage	No

Genome content
Genome length	35,763 bps
GC content	56.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	91.58%
Average CDS length	557.75 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181017_1	PHROG	phrog_937	hemolysin	other
UHGV-0181017_1	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0181017_2	PHROG	phrog_881	holin	lysis
UHGV-0181017_2	UniRef90	UniRef90_A0A317M6V7	Dp-1 family holin	NA
UHGV-0181017_2	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0181017_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0181017_2	Structural annotation	PF16938	NA	NA
UHGV-0181017_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181017_3	PHROG	phrog_435	endolysin	lysis
UHGV-0181017_3	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181017_3	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0181017_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0181017_3	Pfam	PF05036	SPOR domain	SPOR
UHGV-0181017_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181017_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0181017_4	UniRef90	UniRef90_UPI0008F814CA	helix-turn-helix domain-containing protein	NA
UHGV-0181017_5	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0181017_5	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0181017_5	Structural annotation	PF08965, PF19849, NF041951, COG2944	NA	NA
UHGV-0181017_7	KOfam	K14059	int; integrase	NA
UHGV-0181017_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0181017_7	UniRef90	UniRef90_A0A1Y4UHV7	Site-specific integrase	NA
UHGV-0181017_7	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0181017_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0181017_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181017_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181017_7	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0181017_8	eggNOG-mapper	1462527.CCDM010000001_gene1872	NA	NA
UHGV-0181017_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181017_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181017_9	UniRef90	UniRef90_A0A3D1SC21	AbrB family transcriptional regulator	NA
UHGV-0181017_9	eggNOG-mapper	411467.BACCAP_04149	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181017_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181017_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0181017_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181017_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0181017_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0181017_10	UniRef90	UniRef90_A0A1L7GTP0	HTH cro/C1-type domain-containing protein	NA
UHGV-0181017_10	eggNOG-mapper	522772.Dacet_0633	IrrE N-terminal-like domain	NA
UHGV-0181017_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181017_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0181017_11	PHROG	phrog_7338	NA	unknown function
UHGV-0181017_11	UniRef90	UniRef90_R6MV99	DNA binding domain protein excisionase family	NA
UHGV-0181017_11	eggNOG-mapper	742723.HMPREF9477_00648	Helix-turn-helix domain	NA
UHGV-0181017_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0181017_11	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0181017_18	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181017_18	UniRef90	UniRef90_UPI000691FB66	NA	NA
UHGV-0181017_18	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0181017_18	Pfam	PF06378	NA	DUF1071
UHGV-0181017_18	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0181017_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0181017_19	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0181017_19	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0181017_19	Structural annotation	PF05772	NA	NA
UHGV-0181017_21	PHROG	phrog_16304	NA	unknown function
UHGV-0181017_21	UniRef90	UniRef90_A0A3R6LJJ8	NA	NA
UHGV-0181017_21	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0181017_21	Pfam	PF19808	NA	DUF6291
UHGV-0181017_21	Structural annotation	PF19808	NA	NA
UHGV-0181017_22	PHROG	phrog_9804	NA	unknown function
UHGV-0181017_22	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0181017_22	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0181017_22	AcrCatalog	cluster_137185	NA	NA
UHGV-0181017_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0181017_22	Structural annotation	PF11417	NA	NA
UHGV-0181017_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181017_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181017_24	UniRef90	UniRef90_A0A3A6NAH2	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0181017_24	eggNOG-mapper	1278311.AUAL01000001_gene43	crossover junction endodeoxyribonuclease activity	NA
UHGV-0181017_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181017_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181017_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0181017_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181017_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181017_25	UniRef90	UniRef90_A0A2V2FR21	Single-stranded DNA-binding protein	NA
UHGV-0181017_25	eggNOG-mapper	445971.ANASTE_01949	Single-stranded DNA-binding protein	NA
UHGV-0181017_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181017_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181017_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181017_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181017_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0181017_28	PHROG	phrog_20532	NA	unknown function
UHGV-0181017_28	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0181017_28	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0181017_29	PHROG	phrog_23490	NA	unknown function
UHGV-0181017_29	NCBIFam	TIGR03831.1	YgiT-type zinc finger protein	NA
UHGV-0181017_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181017_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181017_35	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0181017_39	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0181017_39	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0181017_39	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0181017_39	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0181017_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0181017_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0181017_39	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181017_39	COG	COG0863	DNA modification methylase	NA
UHGV-0181017_39	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0181017_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181017_41	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0181017_41	UniRef90	UniRef90_A0A2V2F595	PBSX family phage terminase large subunit	NA
UHGV-0181017_41	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0181017_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181017_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181017_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181017_41	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181017_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181017_42	UniRef90	UniRef90_UPI000C8223FC	phage portal protein	NA
UHGV-0181017_42	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0181017_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181017_42	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0181017_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181017_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181017_43	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-0181017_43	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0181017_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181017_43	COG	COG2369	NA	NA
UHGV-0181017_43	Structural annotation	PF06152	NA	NA
UHGV-0181017_45	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0181017_45	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0181017_47	PHROG	phrog_422	major head protein	head and packaging
UHGV-0181017_47	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0181017_47	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0181017_47	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181017_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181017_49	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0181017_49	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0181017_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181017_50	eggNOG-mapper	1295642.H839_08329	Minor capsid protein	NA
UHGV-0181017_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181017_50	Structural annotation	PF11114	NA	NA
UHGV-0181017_51	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0181017_51	Structural annotation	PF12691	NA	NA
UHGV-0181017_52	PHROG	phrog_820	major tail protein	tail
UHGV-0181017_52	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0181017_52	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0181017_52	COG	COG5492	NA	NA
UHGV-0181017_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181017_54	PHROG	phrog_706	NA	unknown function
UHGV-0181017_54	UniRef90	UniRef90_UPI001E629CF3	bacteriophage Gp15 family protein	NA
UHGV-0181017_54	eggNOG-mapper	935836.JAEL01000086_gene44	Bacteriophage Gp15 protein	NA
UHGV-0181017_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181017_54	Structural annotation	PF06854	NA	NA
UHGV-0181017_55	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0181017_55	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0181017_55	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0181017_55	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0181017_55	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0181017_55	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181017_55	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0181017_56	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0181017_57	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0181017_57	UniRef90	UniRef90_UPI001030044F	phage tail protein	NA
UHGV-0181017_57	eggNOG-mapper	596315.HMPREF0634_0228	Phage minor structural protein	NA
UHGV-0181017_57	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181017_57	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181017_57	COG	COG4926	Phage-related protein	NA
UHGV-0181017_58	PHROG	phrog_372	tail protein	tail
UHGV-0181017_58	UniRef90	UniRef90_A0A1Y4MZW4	Fibronectin type-III domain-containing protein	NA
UHGV-0181017_58	eggNOG-mapper	1308863.U5J9V2_9CAUD	NA	NA
UHGV-0181017_58	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA