UHGV-0181046

Genome information

Genome length 44,008 bps

CDS count 69

Completeness 100.00% (complete)

geNomad score 0.9679

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181046
vOTU ID	vOTU-005380
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592889
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9679
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41
Jumbo phage	No

Genome content
Genome length	44,008 bps
GC content	33.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	87.10%
Average CDS length	558.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181046_2	PHROG	phrog_24451	NA	unknown function
UHGV-0181046_2	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-0181046_7	UniRef90	UniRef90_A0A8F0WFQ8	Outer capsid protein/viral fiber	NA
UHGV-0181046_7	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0181046_8	PHROG	phrog_20016	NA	unknown function
UHGV-0181046_8	UniRef90	UniRef90_A0A395WF88	BclA_C domain-containing protein	NA
UHGV-0181046_8	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0181046_8	Pfam	PF18573	BclA C-terminal domain	BclA_C
UHGV-0181046_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181046_10	PHROG	phrog_443	holin	lysis
UHGV-0181046_10	UniRef90	UniRef90_A0A2U2ELA1	Membrane protein	NA
UHGV-0181046_10	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0181046_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0181046_10	Structural annotation	PF16945	NA	NA
UHGV-0181046_12	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181046_12	PHROG	phrog_7698	endolysin	lysis
UHGV-0181046_12	UniRef90	UniRef90_UPI001D0AA402	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181046_12	eggNOG-mapper	1125712.HMPREF1316_2631	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0181046_12	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0181046_12	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0181046_12	Structural annotation	COG5632	NA	NA
UHGV-0181046_13	KOfam	K14059	int; integrase	NA
UHGV-0181046_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0181046_13	UniRef90	UniRef90_A0A395WBW7	Site-specific integrase	NA
UHGV-0181046_13	eggNOG-mapper	1235796.C815_00955	DNA integration	NA
UHGV-0181046_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181046_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181046_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0181046_15	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0181046_15	UniRef90	UniRef90_A0A413UEK4	NA	NA
UHGV-0181046_15	eggNOG-mapper	936573.HMPREF1147_0268	NA	NA
UHGV-0181046_15	Pfam	PF10097	NA	DUF2335
UHGV-0181046_15	COG	COG5346	NA	NA
UHGV-0181046_15	Structural annotation	PF10097, COG5346	NA	NA
UHGV-0181046_16	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0181046_16	UniRef90	UniRef90_UPI001E5F056E	Ltp family lipoprotein	NA
UHGV-0181046_16	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0181046_16	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0181046_16	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0181046_16	Structural annotation	PF18933, PF02631, MF_02248, MF_01114, NF008627, NF001062, COG5435, COG2137	NA	NA
UHGV-0181046_17	UniRef90	UniRef90_A0A4R1RC20	Putative heavy-metal-binding protein	NA
UHGV-0181046_17	eggNOG-mapper	517418.Ctha_1419	Putative heavy-metal-binding	NA
UHGV-0181046_17	Pfam	PF01906	Putative heavy-metal-binding	YbjQ_1
UHGV-0181046_17	COG	COG0393	NA	NA
UHGV-0181046_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0181046_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181046_18	UniRef90	UniRef90_A0A395WA05	XRE family transcriptional regulator	NA
UHGV-0181046_18	eggNOG-mapper	999413.HMPREF1094_02045	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181046_18	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0181046_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181046_18	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0181046_20	UniRef90	UniRef90_UPI000E4DF961	ribbon-helix-helix domain-containing protein	NA
UHGV-0181046_20	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0181046_20	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0181046_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0181046_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0181046_24	UniRef90	UniRef90_A0A395W9T7	Site-specific integrase	NA
UHGV-0181046_24	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-0181046_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181046_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181046_24	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0181046_26	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181046_26	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-0181046_26	eggNOG-mapper	279808.SH2379	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0181046_26	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0181046_26	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0181046_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0181046_26	Structural annotation	PF09524, PF08679, MF_01909, TIGR02220, NF040939, COG1675	NA	NA
UHGV-0181046_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0181046_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181046_27	UniRef90	UniRef90_A0A395WER8	Bac_DnaA domain-containing protein	NA
UHGV-0181046_27	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-0181046_27	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0181046_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0181046_27	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0181046_28	UniRef90	UniRef90_R6T064	NUMOD4 domain-containing protein	NA
UHGV-0181046_28	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0181046_34	Structural annotation	PF17399	NA	NA
UHGV-0181046_35	UniRef90	UniRef90_A0A395WBY6	NA	NA
UHGV-0181046_38	Structural annotation	PF11061	NA	NA
UHGV-0181046_41	UniRef90	UniRef90_A0A413UEX6	NA	NA
UHGV-0181046_41	Pfam	PF07374	NA	DUF1492
UHGV-0181046_41	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0181046_43	Structural annotation	PF10879	NA	NA
UHGV-0181046_44	PHROG	phrog_2316	NA	unknown function
UHGV-0181046_44	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0181046_44	eggNOG-mapper	1280676.AUJO01000024_gene3262	NA	NA
UHGV-0181046_44	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0181046_45	UniRef90	UniRef90_A0A374RI78	Tnp_DDE_dom domain-containing protein	NA
UHGV-0181046_45	eggNOG-mapper	1235802.C823_05780	Transposase	NA
UHGV-0181046_45	Pfam	PF05598	NA	DUF772
UHGV-0181046_45	Pfam	PF13751	Transposase DDE domain	DDE_Tnp_1_6
UHGV-0181046_45	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0181046_45	Structural annotation	PF13701, NF033551, COG5421	NA	NA
UHGV-0181046_49	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181046_49	UniRef90	UniRef90_A0A395WA48	HNH endonuclease	NA
UHGV-0181046_49	eggNOG-mapper	1211814.CAPG01000074_gene3460	HNH endonuclease	NA
UHGV-0181046_49	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181046_49	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181046_50	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0181046_50	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0181046_50	eggNOG-mapper	1329516.JPST01000017_gene431	Phage terminase, small subunit	NA
UHGV-0181046_50	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181046_50	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0181046_50	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0181046_51	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181046_51	UniRef90	UniRef90_A0A395WD03	Terminase large subunit	NA
UHGV-0181046_51	eggNOG-mapper	742740.HMPREF9474_04307	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0181046_51	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181046_51	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181046_51	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181046_51	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0181046_52	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181046_52	UniRef90	UniRef90_A0A395W9X2	Phage portal protein	NA
UHGV-0181046_52	eggNOG-mapper	1203606.HMPREF1526_01337	Portal protein	NA
UHGV-0181046_52	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181046_52	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181046_52	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181046_53	KOfam	K06904	NA	NA
UHGV-0181046_53	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0181046_53	UniRef90	UniRef90_A0A413UET6	HK97 family phage prohead protease	NA
UHGV-0181046_53	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0181046_53	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0181046_53	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0181046_53	COG	COG3740	Phage head maturation protease	NA
UHGV-0181046_53	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0181046_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181046_54	UniRef90	UniRef90_A0A395WF70	Phage major capsid protein	NA
UHGV-0181046_54	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0181046_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181046_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181046_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181046_54	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181046_55	PHROG	phrog_5223	neck protein	connector
UHGV-0181046_55	UniRef90	UniRef90_A0A374RXD1	DNA-packaging protein	NA
UHGV-0181046_55	Structural annotation	TIGR01560	NA	NA
UHGV-0181046_56	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0181046_56	UniRef90	UniRef90_A0A395WC07	Head-tail adaptor protein	NA
UHGV-0181046_56	eggNOG-mapper	1243664.CAVL020000054_gene3020	head-tail adaptor	NA
UHGV-0181046_56	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0181046_56	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0181046_56	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181046_57	UniRef90	UniRef90_C3DN78	Prophage pi2 protein 38	NA
UHGV-0181046_57	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0181046_58	UniRef90	UniRef90_A0A374RUJ8	HK97 gp10 family phage protein	NA
UHGV-0181046_58	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0181046_58	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0181046_59	PHROG	phrog_88	major tail protein	tail
UHGV-0181046_59	UniRef90	UniRef90_A0A395WA58	Phage tail protein	NA
UHGV-0181046_59	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0181046_59	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0181046_59	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0181046_60	Structural annotation	PF11836	NA	NA
UHGV-0181046_62	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0181046_62	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0181046_62	UniRef90	UniRef90_A0A395WD11	Phage tail tape measure protein	NA
UHGV-0181046_62	eggNOG-mapper	1117379.BABA_17397	Phage tail tape measure protein, TP901 family	NA
UHGV-0181046_62	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0181046_62	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0181046_62	COG	COG5283	Phage-related tail protein	NA
UHGV-0181046_62	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280	NA	NA
UHGV-0181046_63	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181046_63	UniRef90	UniRef90_A0A1C6JHE5	Phage-related protein	NA
UHGV-0181046_63	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0181046_63	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0181046_63	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181046_63	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181046_64	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0181046_64	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-0181046_64	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0181046_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181046_64	COG	COG4926	Phage-related protein	NA
UHGV-0181046_64	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181046_65	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0181046_65	Structural annotation	PF10651, COG5513	NA	NA
UHGV-0181046_66	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0181046_67	Structural annotation	PF16407, TIGR02657, COG3794	NA	NA
UHGV-0181046_68	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA