UHGV-0181088

Genome information

Genome length 30,765 bps

CDS count 52

Completeness 55.66% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181088
vOTU ID	vOTU-029205
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590554
BioSample	SAMN09781703
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.89
Jumbo phage	No

Genome content
Genome length	30,765 bps
GC content	35.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.43%
Average CDS length	570.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181088_1	PHROG	phrog_33130	NA	unknown function
UHGV-0181088_1	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0181088_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0181088_2	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0181088_2	UniRef90	UniRef90_A0A373MWB9	Terminase small subunit	NA
UHGV-0181088_2	eggNOG-mapper	97138.C820_00222	Terminase small subunit	NA
UHGV-0181088_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0181088_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0181088_2	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0181088_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181088_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0181088_3	UniRef90	UniRef90_A0A6L5T7D2	PBSX family phage terminase large subunit	NA
UHGV-0181088_3	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0181088_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181088_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0181088_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181088_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181088_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181088_4	PHROG	phrog_1233	NA	unknown function
UHGV-0181088_4	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0181088_4	Structural annotation	PF13058	NA	NA
UHGV-0181088_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181088_6	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0181088_6	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0181088_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181088_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181088_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181088_7	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0181088_7	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0181088_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181088_7	COG	COG2369	NA	NA
UHGV-0181088_7	Structural annotation	PF06152	NA	NA
UHGV-0181088_8	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181088_8	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0181088_8	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181088_8	Structural annotation	PF06810	NA	NA
UHGV-0181088_9	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0181088_9	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181088_12	PHROG	phrog_3366	NA	unknown function
UHGV-0181088_12	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-0181088_12	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0181088_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181088_13	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181088_13	Structural annotation	PF11114	NA	NA
UHGV-0181088_14	PHROG	phrog_3266	tail completion	connector
UHGV-0181088_14	Structural annotation	PF12691	NA	NA
UHGV-0181088_15	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0181088_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181088_16	Structural annotation	PF20378	NA	NA
UHGV-0181088_17	PHROG	phrog_706	NA	unknown function
UHGV-0181088_17	UniRef90	UniRef90_UPI00156EC658	Gp15 family bacteriophage protein	NA
UHGV-0181088_17	eggNOG-mapper	411490.ANACAC_00711	Bacteriophage Gp15 protein	NA
UHGV-0181088_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181088_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181088_18	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0181088_18	COG	COG5412	Phage-related protein	NA
UHGV-0181088_18	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0181088_19	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0181088_19	eggNOG-mapper	552396.HMPREF0863_00268	NA	NA
UHGV-0181088_19	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0181088_20	PHROG	phrog_538	minor tail protein	tail
UHGV-0181088_20	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0181088_20	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0181088_20	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0181088_22	Structural annotation	PF12571, MF_00791, NF003967, COG2967	NA	NA
UHGV-0181088_23	PHROG	phrog_9994	NA	unknown function
UHGV-0181088_23	UniRef90	UniRef90_UPI000C76CD77	H-type lectin domain-containing protein	NA
UHGV-0181088_23	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0181088_24	PHROG	phrog_9589	endolysin	lysis
UHGV-0181088_24	UniRef90	UniRef90_UPI001A8D0C52	CHAP domain-containing protein	NA
UHGV-0181088_24	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0181088_24	Pfam	PF05257	CHAP domain	CHAP
UHGV-0181088_24	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0181088_24	COG	COG3942	Surface antigen	NA
UHGV-0181088_24	Structural annotation	TIGR02594, COG4991	NA	NA
UHGV-0181088_25	PHROG	phrog_1863	NA	unknown function
UHGV-0181088_25	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0181088_26	PHROG	phrog_443	holin	lysis
UHGV-0181088_26	UniRef90	UniRef90_UPI0004297457	holin	NA
UHGV-0181088_26	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0181088_26	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0181088_26	Structural annotation	PF16945	NA	NA
UHGV-0181088_28	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0181088_28	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0181088_30	PHROG	phrog_21718	NA	unknown function
UHGV-0181088_30	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0181088_32	PHROG	phrog_16490	NA	unknown function
UHGV-0181088_32	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0181088_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181088_41	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0181088_41	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181088_41	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0181088_41	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0181088_41	PADLOC	ZorD1_00003	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0181088_41	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0181088_41	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0181088_41	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0181088_44	PHROG	phrog_34398	NA	unknown function
UHGV-0181088_45	eggNOG-mapper	411459.RUMOBE_01390	NA	NA
UHGV-0181088_46	Structural annotation	PF05777, MF_01186, COG2980	NA	NA
UHGV-0181088_47	PHROG	phrog_6969	NA	unknown function
UHGV-0181088_47	UniRef90	UniRef90_A0A2G9FIX8	Phg_2220_C domain-containing protein	NA
UHGV-0181088_47	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0181088_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0181088_47	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0181088_48	PHROG	phrog_2113	NA	unknown function
UHGV-0181088_48	UniRef90	UniRef90_A0A7V8FWG9	HTH_11 domain-containing protein	NA
UHGV-0181088_48	eggNOG-mapper	580332.Slit_0204	NA	NA
UHGV-0181088_48	Structural annotation	PF06163, TIGR00738, COG3388	NA	NA
UHGV-0181088_49	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0181088_49	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181088_49	UniRef90	UniRef90_A0A7X8JSS1	ATP-binding protein	NA
UHGV-0181088_49	eggNOG-mapper	871584.D9ZNG3_9CAUD	IstB-like ATP binding protein	NA
UHGV-0181088_49	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0181088_49	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0181088_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0181088_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0181088_50	UniRef90	UniRef90_A0A843GEY3	SF4 helicase domain-containing protein	NA
UHGV-0181088_50	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0181088_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0181088_50	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0181088_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181088_51	UniRef90	UniRef90_A0A349YKJ3	PAPS_reduct domain-containing protein (Fragment)	NA
UHGV-0181088_51	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0181088_51	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181088_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181088_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181088_52	UniRef90	UniRef90_R9JML8	PAPS_reduct domain-containing protein	NA
UHGV-0181088_52	eggNOG-mapper	397291.C804_00950	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0181088_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181088_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA