UHGV-0181098

Genome information

Genome length 32,542 bps

CDS count 50

Completeness 92.57% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181098
vOTU ID	vOTU-061562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_585265
BioSample	SAMN09781738
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.57% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.9
Jumbo phage	No

Genome content
Genome length	32,542 bps
GC content	51.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	95.15%
Average CDS length	622.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181098_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0181098_1	UniRef90	UniRef90_A0A6N2W7C0	HNH endonuclease	NA
UHGV-0181098_1	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0181098_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181098_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181098_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0181098_4	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0181098_4	UniRef90	UniRef90_A0A0A7RTX1	Terminase small subunit	NA
UHGV-0181098_4	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0181098_4	Structural annotation	PF07141	NA	NA
UHGV-0181098_5	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0181098_5	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0181098_5	UniRef90	UniRef90_A0A252F2H6	Methyltransferase	NA
UHGV-0181098_5	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0181098_5	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0181098_5	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181098_5	COG	COG0863	DNA modification methylase	NA
UHGV-0181098_5	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0181098_9	PHROG	phrog_18716	NA	unknown function
UHGV-0181098_9	eggNOG-mapper	1029718.SFBM_0379	NA	NA
UHGV-0181098_9	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0181098_11	PHROG	phrog_7711	NA	unknown function
UHGV-0181098_11	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0181098_13	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0181098_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181098_16	UniRef90	UniRef90_R7F9V4	Putative RNA polymerase sigma factor sigma-F	NA
UHGV-0181098_16	eggNOG-mapper	768710.DesyoDRAFT_5168	DNA-templated transcription, initiation	NA
UHGV-0181098_16	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0181098_16	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0181098_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0181098_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181098_17	UniRef90	UniRef90_A0A3A5TME7	AAA family ATPase	NA
UHGV-0181098_17	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0181098_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0181098_17	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0181098_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0181098_17	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0181098_18	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0181098_18	UniRef90	UniRef90_UPI001F0C32A5	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0181098_18	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0181098_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0181098_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0181098_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0181098_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181098_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181098_19	UniRef90	UniRef90_A0A174WGH7	Holliday junction resolvase	NA
UHGV-0181098_19	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0181098_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181098_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181098_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0181098_20	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181098_20	UniRef90	UniRef90_A0A4Z0YED2	HNHc domain-containing protein	NA
UHGV-0181098_20	eggNOG-mapper	1449126.JQKL01000051_gene3178	HNH endonuclease	NA
UHGV-0181098_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0181098_20	Structural annotation	PF13392	NA	NA
UHGV-0181098_21	eggNOG-mapper	1304866.K413DRAFT_4695	NA	NA
UHGV-0181098_21	Structural annotation	NF010673	NA	NA
UHGV-0181098_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181098_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181098_22	UniRef90	UniRef90_A0A1Y4KXI6	Single-stranded DNA-binding protein	NA
UHGV-0181098_22	eggNOG-mapper	588581.Cpap_1479	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0181098_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181098_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181098_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181098_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181098_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0181098_25	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0181098_25	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0181098_25	UniRef90	UniRef90_UPI00085CC716	phage antirepressor KilAC domain-containing protein	NA
UHGV-0181098_25	eggNOG-mapper	1095737.HMPREF1110_1196	AntA/AntB antirepressor	NA
UHGV-0181098_25	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0181098_25	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0181098_25	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0181098_25	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0181098_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181098_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0181098_26	UniRef90	UniRef90_R6RCZ9	DNA-binding helix-turn-helix protein	NA
UHGV-0181098_26	eggNOG-mapper	1321782.HMPREF1986_02244	Helix-turn-helix domain	NA
UHGV-0181098_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181098_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181098_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181098_27	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0181098_27	UniRef90	UniRef90_A0A6L6G8Z9	Helix-turn-helix domain-containing protein	NA
UHGV-0181098_27	eggNOG-mapper	1403946.Q615_SPAC00127G0165	Peptidase S24-like	NA
UHGV-0181098_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181098_27	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0181098_27	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0181098_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181098_29	PHROG	phrog_95	integrase	integration and excision
UHGV-0181098_29	UniRef90	UniRef90_A0A315Y332	DNA invertase Pin-like site-specific DNA recombinase	NA
UHGV-0181098_29	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0181098_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181098_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181098_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181098_29	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0181098_30	KOfam	K07273	acm; lysozyme	NA
UHGV-0181098_30	PHROG	phrog_291	endolysin	lysis
UHGV-0181098_30	UniRef90	UniRef90_A0A2Y9BHS2	Lysozyme	NA
UHGV-0181098_30	eggNOG-mapper	553973.CLOHYLEM_07287	Glycosyl hydrolase, family 25	NA
UHGV-0181098_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0181098_30	Pfam	PF01476	LysM domain	LysM
UHGV-0181098_30	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0181098_30	COG	COG1388	LysM repeat	NA
UHGV-0181098_30	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0181098_31	eggNOG-mapper	1007096.BAGW01000017_gene815	NA	NA
UHGV-0181098_33	UniRef90	UniRef90_UPI001F485105	branched-chain amino acid ABC transporter permease	NA
UHGV-0181098_33	eggNOG-mapper	1232453.BAIF02000013_gene3226	NA	NA
UHGV-0181098_36	PHROG	phrog_1220	head protein	head and packaging
UHGV-0181098_36	eggNOG-mapper	755731.Clo1100_0558	COG NOG18825 non supervised orthologous group	NA
UHGV-0181098_36	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0181098_37	PHROG	phrog_538	minor tail protein	tail
UHGV-0181098_37	UniRef90	UniRef90_A0A843FNJ4	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0181098_37	eggNOG-mapper	742733.HMPREF9469_05018	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0181098_37	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0181098_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181098_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181098_38	UniRef90	UniRef90_A0A6N7STN1	Phage tail family protein	NA
UHGV-0181098_38	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-0181098_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0181098_38	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0181098_39	PHROG	phrog_23464	NA	unknown function
UHGV-0181098_39	UniRef90	UniRef90_A0A6N2WBJ7	Chromosome partition protein Smc	NA
UHGV-0181098_39	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0181098_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0181098_39	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0181098_41	PHROG	phrog_88	major tail protein	tail
UHGV-0181098_41	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0181098_41	eggNOG-mapper	279010.BL03510	Phage major tail protein phi13	NA
UHGV-0181098_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0181098_41	COG	COG5492	NA	NA
UHGV-0181098_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0181098_42	Structural annotation	PF05657	NA	NA
UHGV-0181098_43	Structural annotation	TIGR01725	NA	NA
UHGV-0181098_44	UniRef90	UniRef90_A0A6N7SSZ0	Head-tail adaptor protein	NA
UHGV-0181098_44	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0181098_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181098_45	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0181098_45	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0181098_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181098_46	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-0181098_46	eggNOG-mapper	198094.BA_0468	Phage capsid family	NA
UHGV-0181098_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181098_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181098_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181098_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181098_47	KOfam	K06904	NA	NA
UHGV-0181098_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0181098_47	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0181098_47	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0181098_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0181098_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0181098_47	COG	COG3740	Phage head maturation protease	NA
UHGV-0181098_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0181098_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181098_48	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0181098_48	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0181098_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181098_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181098_48	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181098_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181098_49	UniRef90	UniRef90_A0A6N2W9V8	Phage Terminase	NA
UHGV-0181098_49	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0181098_49	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181098_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181098_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181098_49	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA