UHGV-0181106

Genome information

Genome length 25,544 bps

CDS count 43

Completeness 64.23% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181106
vOTU ID	vOTU-029207
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_583999
BioSample	SAMN09781704
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.11
Jumbo phage	No

Genome content
Genome length	25,544 bps
GC content	54.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.64%
Average CDS length	553.33 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181106_2	PHROG	phrog_18110	NA	unknown function
UHGV-0181106_2	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0181106_2	eggNOG-mapper	871584.D9ZNF0_9CAUD	peptidoglycan catabolic process	NA
UHGV-0181106_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181106_2	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0181106_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181106_3	UniRef90	UniRef90_A0A1C6G0J5	Phage tail protein	NA
UHGV-0181106_3	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181106_4	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0181106_4	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0181106_4	eggNOG-mapper	307480.IW16_05845	tape measure	NA
UHGV-0181106_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0181106_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0181106_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181106_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0181106_5	PHROG	phrog_706	NA	unknown function
UHGV-0181106_5	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0181106_5	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0181106_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181106_5	Structural annotation	PF06854	NA	NA
UHGV-0181106_6	Structural annotation	PF20378	NA	NA
UHGV-0181106_7	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0181106_7	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0181106_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181106_8	PHROG	phrog_3266	tail completion	connector
UHGV-0181106_8	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0181106_8	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0181106_8	Structural annotation	PF12691	NA	NA
UHGV-0181106_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181106_9	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-0181106_9	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0181106_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181106_9	Structural annotation	PF11114	NA	NA
UHGV-0181106_10	PHROG	phrog_3366	NA	unknown function
UHGV-0181106_10	Pfam	PF20536	NA	DUF6751
UHGV-0181106_10	Structural annotation	PF20536	NA	NA
UHGV-0181106_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181106_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181106_12	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-0181106_12	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-0181106_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181106_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181106_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181106_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181106_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181106_13	UniRef90	UniRef90_A0A1C6FYX1	Phage minor structural protein GP20	NA
UHGV-0181106_13	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0181106_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181106_13	Structural annotation	PF06810	NA	NA
UHGV-0181106_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0181106_14	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0181106_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0181106_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181106_16	UniRef90	UniRef90_D4K446	Phage minor capsid protein 2	NA
UHGV-0181106_16	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0181106_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181106_16	COG	COG2369	NA	NA
UHGV-0181106_16	Structural annotation	PF06152	NA	NA
UHGV-0181106_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181106_17	UniRef90	UniRef90_A0A291T9A9	Capsid protein	NA
UHGV-0181106_17	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0181106_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181106_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181106_18	PHROG	phrog_10250	NA	unknown function
UHGV-0181106_18	UniRef90	UniRef90_A0A3A6EEP8	PBSX family phage terminase large subunit	NA
UHGV-0181106_18	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0181106_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181106_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181106_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181106_18	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181106_19	PHROG	phrog_2412	NA	unknown function
UHGV-0181106_22	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0181106_23	Structural annotation	PF17599, PF14282, NF011879	NA	NA
UHGV-0181106_25	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0181106_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0181106_27	Structural annotation	PF14354	NA	NA
UHGV-0181106_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181106_28	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181106_28	UniRef90	UniRef90_A0A844DBG8	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0181106_28	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0181106_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181106_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181106_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0181106_29	PHROG	phrog_3136	NA	unknown function
UHGV-0181106_29	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0181106_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0181106_29	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0181106_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0181106_30	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0181106_30	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0181106_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181106_30	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0181106_32	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0181106_33	PHROG	phrog_15768	NA	unknown function
UHGV-0181106_33	UniRef90	UniRef90_E2ZNS6	NA	NA
UHGV-0181106_33	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0181106_33	Pfam	PF19808	NA	DUF6291
UHGV-0181106_33	Structural annotation	PF19808	NA	NA
UHGV-0181106_34	PHROG	phrog_4572	NA	unknown function
UHGV-0181106_34	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0181106_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181106_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181106_35	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0181106_35	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0181106_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181106_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181106_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181106_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181106_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0181106_36	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181106_36	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0181106_36	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0181106_36	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0181106_38	Structural annotation	PF14120	NA	NA
UHGV-0181106_41	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0181106_43	PHROG	phrog_27197	NA	unknown function
UHGV-0181106_43	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0181106_43	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0181106_43	Structural annotation	NF007410	NA	NA