UHGV-0181118

Genome information

Genome length 44,866 bps

CDS count 67

Completeness 99.09% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181118
vOTU ID	vOTU-060450
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_592472
BioSample	SAMN09781743
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length	44,866 bps
GC content	40.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.75%
Average CDS length	611.02 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181118_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0181118_1	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0181118_1	eggNOG-mapper	903814.ELI_3237	sequence-specific DNA binding	NA
UHGV-0181118_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181118_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181118_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181118_2	Structural annotation	COG1321	NA	NA
UHGV-0181118_8	Structural annotation	NF011879	NA	NA
UHGV-0181118_9	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0181118_10	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181118_10	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0181118_10	eggNOG-mapper	1256908.HMPREF0373_00658	AAA domain	NA
UHGV-0181118_10	Structural annotation	PF08423, TIGR01618	NA	NA
UHGV-0181118_11	PHROG	phrog_18107	NA	unknown function
UHGV-0181118_11	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-0181118_11	Structural annotation	PF05037	NA	NA
UHGV-0181118_12	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0181118_12	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0181118_12	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0181118_12	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0181118_12	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0181118_13	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0181118_13	PHROG	phrog_11992	NA	unknown function
UHGV-0181118_13	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0181118_13	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0181118_13	PADLOC	drt-UG29	DRT	DRT
UHGV-0181118_13	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0181118_13	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0181118_13	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0181118_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0181118_14	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0181118_14	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0181118_14	Pfam	PF06048	NA	DUF927
UHGV-0181118_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0181118_14	COG	COG5519	NA	NA
UHGV-0181118_14	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0181118_15	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0181118_15	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0181118_15	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0181118_15	eggNOG-mapper	1504823.CCMM01000005_gene215	Caulimovirus viroplasmin	NA
UHGV-0181118_15	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0181118_15	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0181118_15	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0181118_15	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-0181118_17	PHROG	phrog_17690	NA	unknown function
UHGV-0181118_17	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0181118_18	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0181118_18	Pfam	PF12840	Helix-turn-helix domain	HTH_20
UHGV-0181118_18	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0181118_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0181118_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0181118_19	UniRef90	UniRef90_A0A3E2TTJ5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0181118_19	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0181118_19	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0181118_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0181118_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181118_19	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0181118_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0181118_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181118_20	UniRef90	UniRef90_UPI000CF96674	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0181118_20	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0181118_20	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0181118_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181118_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181118_20	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0181118_21	Structural annotation	NF041070	NA	NA
UHGV-0181118_22	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0181118_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0181118_22	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-0181118_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0181118_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0181118_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0181118_23	PHROG	phrog_4601	NA	unknown function
UHGV-0181118_24	PHROG	phrog_15198	NA	unknown function
UHGV-0181118_24	UniRef90	UniRef90_UPI001C00FD03	NA	NA
UHGV-0181118_24	eggNOG-mapper	1235799.C818_04211	NA	NA
UHGV-0181118_24	Pfam	PF04448	NA	DUF551
UHGV-0181118_27	PHROG	phrog_20593	NA	unknown function
UHGV-0181118_28	PHROG	phrog_8684	NA	unknown function
UHGV-0181118_28	UniRef90	UniRef90_A0A1C5WGR7	YopX protein	NA
UHGV-0181118_28	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0181118_28	Pfam	PF09643	YopX protein	YopX
UHGV-0181118_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0181118_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0181118_30	eggNOG-mapper	1235792.C808_03073	NA	NA
UHGV-0181118_32	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0181118_32	Structural annotation	PF11302	NA	NA
UHGV-0181118_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0181118_33	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0181118_33	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0181118_33	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0181118_33	Structural annotation	PF12643, NF001613, COG0140	NA	NA
UHGV-0181118_34	PHROG	phrog_10678	NA	unknown function
UHGV-0181118_35	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0181118_35	AcrCatalog	cluster_11670	NA	NA
UHGV-0181118_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0181118_36	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0181118_36	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0181118_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0181118_36	Structural annotation	PF16677	NA	NA
UHGV-0181118_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181118_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0181118_37	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0181118_37	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0181118_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181118_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0181118_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181118_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181118_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181118_38	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0181118_38	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0181118_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181118_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181118_40	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0181118_40	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0181118_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181118_40	COG	COG2369	NA	NA
UHGV-0181118_40	Structural annotation	PF06152	NA	NA
UHGV-0181118_41	PHROG	phrog_3754	NA	unknown function
UHGV-0181118_41	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0181118_42	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0181118_42	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0181118_43	PHROG	phrog_21718	NA	unknown function
UHGV-0181118_43	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0181118_44	PHROG	phrog_22984	NA	unknown function
UHGV-0181118_45	PHROG	phrog_16490	NA	unknown function
UHGV-0181118_45	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0181118_46	PHROG	phrog_20016	NA	unknown function
UHGV-0181118_46	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0181118_46	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0181118_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181118_47	PHROG	phrog_28802	NA	unknown function
UHGV-0181118_47	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0181118_48	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181118_48	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0181118_48	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0181118_48	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181118_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-0181118_49	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0181118_49	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0181118_49	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0181118_49	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181118_50	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181118_50	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0181118_52	PHROG	phrog_774	NA	unknown function
UHGV-0181118_52	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0181118_53	PHROG	phrog_18218	NA	unknown function
UHGV-0181118_53	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0181118_53	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0181118_53	Structural annotation	PF06946	NA	NA
UHGV-0181118_54	PHROG	phrog_3366	NA	unknown function
UHGV-0181118_54	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0181118_54	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0181118_55	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181118_55	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0181118_55	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0181118_55	Structural annotation	PF11114	NA	NA
UHGV-0181118_56	PHROG	phrog_3266	tail completion	connector
UHGV-0181118_56	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0181118_56	Structural annotation	PF12691	NA	NA
UHGV-0181118_57	PHROG	phrog_3099	NA	unknown function
UHGV-0181118_57	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0181118_57	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181118_58	PHROG	phrog_11299	NA	unknown function
UHGV-0181118_58	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0181118_58	Structural annotation	PF10666	NA	NA
UHGV-0181118_59	PHROG	phrog_706	NA	unknown function
UHGV-0181118_59	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0181118_59	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0181118_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181118_59	Structural annotation	PF06854	NA	NA
UHGV-0181118_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181118_60	UniRef90	UniRef90_A0A1C5P271	Chromosome segregation protein	NA
UHGV-0181118_60	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0181118_60	COG	COG5412	Phage-related protein	NA
UHGV-0181118_61	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0181118_62	PHROG	phrog_6616	tail protein	tail
UHGV-0181118_62	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0181118_62	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0181118_62	COG	COG4926	Phage-related protein	NA
UHGV-0181118_62	Structural annotation	PF05113, PF02010, NF033848, NF007392, COG3500	NA	NA
UHGV-0181118_65	KOfam	K21478	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	NA
UHGV-0181118_65	UniRef90	UniRef90_A0A0G0YPV3	NodB homology domain-containing protein	NA
UHGV-0181118_65	eggNOG-mapper	706587.Desti_5511	PFAM Polysaccharide deacetylase	NA
UHGV-0181118_65	Pfam	PF01522	Polysaccharide deacetylase	Polysacc_deac_1
UHGV-0181118_65	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-0181118_66	PHROG	phrog_38078	NA	unknown function
UHGV-0181118_66	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0181118_66	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0181118_66	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0181118_66	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0181118_66	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0181118_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181118_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0181118_67	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0181118_67	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0181118_67	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181118_67	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0181118_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181118_67	Structural annotation	PF07508, PF09454, NF041201	NA	NA