UHGV-0181132

Genome information

Genome length 39,668 bps

CDS count 59

Completeness 93.18% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181132
vOTU ID	vOTU-070485
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_590137
BioSample	SAMN09781769
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.34
Jumbo phage	No

Genome content
Genome length	39,668 bps
GC content	43.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.75%
Average CDS length	606.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181132_1	KOfam	K14059	int; integrase	NA
UHGV-0181132_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0181132_1	UniRef90	UniRef90_R6ZYN0	Site-specific recombinase phage integrase family	NA
UHGV-0181132_1	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-0181132_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181132_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181132_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0181132_2	PHROG	phrog_5319	outer membrane protein	other
UHGV-0181132_2	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0181132_2	COG	COG3103	NA	NA
UHGV-0181132_3	PHROG	phrog_87	metallo-protease	other
UHGV-0181132_3	UniRef90	UniRef90_A0A316M7A2	Peptidase_M78 domain-containing protein	NA
UHGV-0181132_3	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0181132_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0181132_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0181132_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0181132_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181132_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181132_4	UniRef90	UniRef90_UPI001C0368C0	helix-turn-helix domain-containing protein	NA
UHGV-0181132_4	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181132_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181132_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181132_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0181132_5	UniRef90	UniRef90_A0A6N3H7Q7	Helix-turn-helix domain protein	NA
UHGV-0181132_5	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181132_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181132_5	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0181132_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181132_11	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0181132_12	Structural annotation	PF12750	NA	NA
UHGV-0181132_16	PHROG	phrog_674	NA	unknown function
UHGV-0181132_16	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0181132_16	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0181132_16	Pfam	PF07083	NA	DUF1351
UHGV-0181132_16	Structural annotation	PF07083	NA	NA
UHGV-0181132_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181132_17	UniRef90	UniRef90_A0A173S979	ERF superfamily	NA
UHGV-0181132_17	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0181132_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-0181132_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181132_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0181132_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0181132_18	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0181132_19	PHROG	phrog_7566	NA	unknown function
UHGV-0181132_19	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0181132_20	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181132_20	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0181132_20	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0181132_21	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181132_21	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0181132_21	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0181132_21	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0181132_22	PHROG	phrog_16304	NA	unknown function
UHGV-0181132_22	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-0181132_22	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0181132_22	Pfam	PF19808	NA	DUF6291
UHGV-0181132_22	Structural annotation	PF19808	NA	NA
UHGV-0181132_25	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0181132_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181132_26	PHROG	phrog_98	NA	unknown function
UHGV-0181132_26	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-0181132_26	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0181132_26	Pfam	PF09643	YopX protein	YopX
UHGV-0181132_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0181132_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0181132_27	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0181132_28	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0181132_29	PHROG	phrog_874	NA	unknown function
UHGV-0181132_29	eggNOG-mapper	1235793.C809_02214	NA	NA
UHGV-0181132_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0181132_30	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181132_30	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0181132_30	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0181132_30	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181132_30	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0181132_31	PHROG	phrog_14088	NA	unknown function
UHGV-0181132_31	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0181132_31	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0181132_32	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181132_32	UniRef90	UniRef90_UPI00109BC3B9	NA	NA
UHGV-0181132_32	eggNOG-mapper	588581.Cpap_0887	NA	NA
UHGV-0181132_32	Structural annotation	PF06573	NA	NA
UHGV-0181132_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0181132_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0181132_34	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0181132_34	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0181132_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0181132_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0181132_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181132_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0181132_37	eggNOG-mapper	457421.CBFG_03465	NA	NA
UHGV-0181132_38	PHROG	phrog_33130	NA	unknown function
UHGV-0181132_38	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0181132_38	Structural annotation	PF10922	NA	NA
UHGV-0181132_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181132_40	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0181132_40	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0181132_40	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0181132_40	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0181132_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181132_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181132_40	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181132_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181132_41	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0181132_41	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0181132_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181132_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181132_42	UniRef90	UniRef90_UPI001C0ECC47	minor capsid protein	NA
UHGV-0181132_42	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0181132_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181132_42	Structural annotation	PF11114	NA	NA
UHGV-0181132_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181132_43	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0181132_43	eggNOG-mapper	1160721.RBI_II00541	NA	NA
UHGV-0181132_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181132_43	COG	COG2369	NA	NA
UHGV-0181132_43	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0181132_45	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0181132_46	PHROG	phrog_247	major head protein	head and packaging
UHGV-0181132_46	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0181132_46	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0181132_46	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0181132_46	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0181132_46	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0181132_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181132_47	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0181132_48	PHROG	phrog_1048	NA	unknown function
UHGV-0181132_48	UniRef90	UniRef90_UPI00189A7662	NA	NA
UHGV-0181132_48	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0181132_48	Pfam	PF11195	NA	DUF2829
UHGV-0181132_48	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0181132_48	Structural annotation	PF11195	NA	NA
UHGV-0181132_49	PHROG	phrog_3366	NA	unknown function
UHGV-0181132_49	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0181132_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0181132_50	PHROG	phrog_3266	tail completion	connector
UHGV-0181132_50	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0181132_50	Structural annotation	PF12691	NA	NA
UHGV-0181132_51	PHROG	phrog_3099	NA	unknown function
UHGV-0181132_51	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0181132_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181132_52	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0181132_52	Structural annotation	PF10666	NA	NA
UHGV-0181132_53	PHROG	phrog_706	NA	unknown function
UHGV-0181132_53	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0181132_53	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0181132_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181132_53	Structural annotation	PF06854	NA	NA
UHGV-0181132_54	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0181132_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181132_54	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0181132_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181132_55	PHROG	phrog_1194	NA	unknown function
UHGV-0181132_55	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0181132_55	Pfam	PF20458	NA	DUF6711
UHGV-0181132_55	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0181132_56	PHROG	phrog_18190	NA	unknown function
UHGV-0181132_56	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0181132_56	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0181132_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0181132_56	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0181132_57	PHROG	phrog_2566	NA	unknown function
UHGV-0181132_58	PHROG	phrog_17196	kinase	other
UHGV-0181132_58	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-0181132_58	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0181132_58	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0181132_59	Structural annotation	PF02839	NA	NA