UHGV-0181160

Genome information

Genome length 29,916 bps

CDS count 36

Completeness 67.50% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181160
vOTU ID	vOTU-022601
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593315
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.39
Jumbo phage	No

Genome content
Genome length	29,916 bps
GC content	48.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	95.11%
Average CDS length	791.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181160_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181160_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0181160_2	UniRef90	UniRef90_R7FBT6	Recombinase	NA
UHGV-0181160_2	eggNOG-mapper	697281.Mahau_2563	resolvase	NA
UHGV-0181160_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181160_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181160_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181160_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0181160_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181160_3	PHROG	phrog_1794	amidase	lysis
UHGV-0181160_3	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0181160_3	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0181160_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0181160_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0181160_3	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0181160_4	PHROG	phrog_443	holin	lysis
UHGV-0181160_4	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0181160_4	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0181160_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0181160_4	Structural annotation	PF16945	NA	NA
UHGV-0181160_5	PHROG	phrog_1193	hemolysin	other
UHGV-0181160_5	UniRef90	UniRef90_R7H572	Gp19	NA
UHGV-0181160_5	eggNOG-mapper	1292035.H476_1000	Haemolysin XhlA	NA
UHGV-0181160_5	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0181160_7	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0181160_9	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0181160_9	UniRef90	UniRef90_R7FII5	PhageMin_Tail domain-containing protein	NA
UHGV-0181160_9	eggNOG-mapper	411473.RUMCAL_01938	tail tape measure protein, TP901	NA
UHGV-0181160_9	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0181160_9	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0181160_9	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0181160_10	PHROG	phrog_774	NA	unknown function
UHGV-0181160_10	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0181160_12	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-0181160_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181160_13	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0181160_13	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0181160_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181160_13	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0181160_13	COG	COG2369	NA	NA
UHGV-0181160_13	Structural annotation	PF06152	NA	NA
UHGV-0181160_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181160_14	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0181160_14	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0181160_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181160_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181160_15	PHROG	phrog_10250	NA	unknown function
UHGV-0181160_15	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0181160_15	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0181160_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181160_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181160_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181160_15	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181160_16	PHROG	phrog_706	NA	unknown function
UHGV-0181160_16	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0181160_16	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0181160_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181160_16	Structural annotation	PF06854	NA	NA
UHGV-0181160_17	PHROG	phrog_4450	NA	unknown function
UHGV-0181160_17	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0181160_17	Pfam	PF20378	NA	DUF6673
UHGV-0181160_17	Structural annotation	PF20378	NA	NA
UHGV-0181160_18	PHROG	phrog_3099	NA	unknown function
UHGV-0181160_18	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0181160_18	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0181160_19	PHROG	phrog_3266	tail completion	connector
UHGV-0181160_19	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0181160_19	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0181160_19	Structural annotation	PF12691	NA	NA
UHGV-0181160_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181160_20	eggNOG-mapper	1292035.H476_1011	Minor capsid protein	NA
UHGV-0181160_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181160_20	Structural annotation	PF11114	NA	NA
UHGV-0181160_21	PHROG	phrog_3366	NA	unknown function
UHGV-0181160_21	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0181160_21	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0181160_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181160_22	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0181160_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-0181160_23	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0181160_23	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0181160_23	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181160_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181160_24	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0181160_24	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0181160_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181160_24	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0181160_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0181160_25	PHROG	phrog_17390	NA	unknown function
UHGV-0181160_25	UniRef90	UniRef90_UPI0001F01BB6	terminase small subunit	NA
UHGV-0181160_25	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0181160_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0181160_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0181160_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181160_26	UniRef90	UniRef90_UPI001D017002	NA	NA
UHGV-0181160_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0181160_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181160_26	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0181160_28	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0181160_28	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181160_28	UniRef90	UniRef90_A0A327YN49	SNF2 domain-containing protein	NA
UHGV-0181160_28	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-0181160_28	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0181160_28	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0181160_28	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0181160_28	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0181160_28	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0181160_29	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181160_29	UniRef90	UniRef90_A0A2S0JWS5	Nuclease	NA
UHGV-0181160_29	eggNOG-mapper	1395587.P364_0122120	VRR_NUC	NA
UHGV-0181160_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0181160_29	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0181160_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181160_30	UniRef90	UniRef90_UPI0018CF4112	virulence-associated E family protein	NA
UHGV-0181160_30	eggNOG-mapper	717606.PaecuDRAFT_3110	virulence-associated E family protein	NA
UHGV-0181160_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0181160_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0181160_30	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0181160_31	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0181160_31	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0181160_31	UniRef90	UniRef90_UPI0014517056	DNA polymerase	NA
UHGV-0181160_31	eggNOG-mapper	1449126.JQKL01000006_gene840	DNA polymerase	NA
UHGV-0181160_31	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0181160_31	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0181160_31	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0181160_32	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181160_32	UniRef90	UniRef90_UPI0009F98B20	NA	NA
UHGV-0181160_32	eggNOG-mapper	1449126.JQKL01000006_gene839	NA	NA
UHGV-0181160_32	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0181160_32	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0181160_33	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181160_33	UniRef90	UniRef90_UPI000783C69C	NA	NA
UHGV-0181160_33	eggNOG-mapper	1460635.JCM19038_2776	NA	NA
UHGV-0181160_33	Pfam	PF10926	NA	DUF2800
UHGV-0181160_33	COG	COG2887	RecB family exonuclease	NA
UHGV-0181160_33	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0181160_34	PHROG	phrog_18562	NA	unknown function
UHGV-0181160_34	eggNOG-mapper	679201.HMPREF9334_00305	NA	NA