UHGV-0181164

Genome information

Genome length 31,327 bps

CDS count 40

Completeness 89.04% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181164
vOTU ID	vOTU-029209
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593311
BioSample	SAMN09781784
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.37
Jumbo phage	No

Genome content
Genome length	31,327 bps
GC content	38.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	88.22%
Average CDS length	693.60 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181164_1	PHROG	phrog_5302	tail protein	tail
UHGV-0181164_1	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0181164_1	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0181164_1	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0181164_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0181164_2	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0181164_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181164_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181164_2	COG	COG1511	NA	NA
UHGV-0181164_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181164_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181164_3	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0181164_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0181164_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181164_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181164_4	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0181164_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0181164_4	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0181164_4	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0181164_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0181164_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0181164_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0181164_5	Structural annotation	PF11836	NA	NA
UHGV-0181164_6	PHROG	phrog_88	major tail protein	tail
UHGV-0181164_6	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0181164_6	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0181164_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0181164_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0181164_7	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0181164_7	eggNOG-mapper	1469948.JPNB01000001_gene696	NA	NA
UHGV-0181164_7	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0181164_7	Structural annotation	TIGR01725	NA	NA
UHGV-0181164_8	eggNOG-mapper	1145276.T479_19945	NA	NA
UHGV-0181164_8	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0181164_9	PHROG	phrog_19734	NA	unknown function
UHGV-0181164_9	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0181164_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0181164_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181164_10	PHROG	phrog_749	NA	unknown function
UHGV-0181164_10	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0181164_10	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0181164_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181164_11	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0181164_11	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0181164_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181164_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181164_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181164_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181164_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0181164_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0181164_12	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0181164_12	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0181164_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0181164_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0181164_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0181164_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181164_13	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0181164_13	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0181164_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181164_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0181164_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181164_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181164_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181164_14	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0181164_14	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0181164_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181164_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181164_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181164_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0181164_15	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0181164_15	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0181164_15	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0181164_15	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181164_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0181164_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181164_16	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0181164_16	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0181164_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181164_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181164_17	PHROG	phrog_31049	NA	unknown function
UHGV-0181164_17	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0181164_17	Structural annotation	TIGR01636	NA	NA
UHGV-0181164_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181164_18	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0181164_18	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0181164_21	PHROG	phrog_8684	NA	unknown function
UHGV-0181164_21	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0181164_21	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0181164_21	Pfam	PF09643	YopX protein	YopX
UHGV-0181164_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0181164_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0181164_22	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181164_22	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0181164_22	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0181164_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181164_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181164_22	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0181164_23	PHROG	phrog_824	NA	unknown function
UHGV-0181164_23	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0181164_23	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0181164_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0181164_23	Structural annotation	PF08774	NA	NA
UHGV-0181164_24	PHROG	phrog_24518	NA	unknown function
UHGV-0181164_24	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0181164_25	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0181164_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0181164_25	UniRef90	UniRef90_UPI001B3C6404	tyrosine-type recombinase/integrase	NA
UHGV-0181164_25	eggNOG-mapper	796940.HMPREF9628_00159	Belongs to the 'phage' integrase family	NA
UHGV-0181164_25	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0181164_25	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181164_25	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0181164_26	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181164_26	UniRef90	UniRef90_UPI001C01CFF8	SANT/Myb domain-containing protein	NA
UHGV-0181164_26	eggNOG-mapper	394503.Ccel_3305	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0181164_26	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0181164_26	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0181164_26	Structural annotation	PF11112, NF040595	NA	NA
UHGV-0181164_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0181164_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0181164_28	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0181164_28	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0181164_28	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0181164_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0181164_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0181164_28	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0181164_30	Structural annotation	COG1862	NA	NA
UHGV-0181164_31	PHROG	phrog_6058	NA	unknown function
UHGV-0181164_31	Structural annotation	NF033787	NA	NA
UHGV-0181164_33	PHROG	phrog_585	NA	unknown function
UHGV-0181164_33	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0181164_33	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0181164_33	Pfam	PF10711	NA	DUF2513
UHGV-0181164_33	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0181164_35	UniRef90	UniRef90_UPI001897B0FF	helix-turn-helix transcriptional regulator	NA
UHGV-0181164_35	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181164_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181164_35	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0181164_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181164_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181164_36	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0181164_36	eggNOG-mapper	272562.CA_C1559	sequence-specific DNA binding	NA
UHGV-0181164_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181164_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0181164_36	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0181164_37	PHROG	phrog_1914	NA	unknown function
UHGV-0181164_37	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0181164_37	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0181164_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0181164_37	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0181164_37	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0181164_40	KOfam	K14059	int; integrase	NA
UHGV-0181164_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0181164_40	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0181164_40	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0181164_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181164_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181164_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA