UHGV-0181185

Genome information

Genome length 33,656 bps

CDS count 45

Completeness 56.19% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181185
vOTU ID	vOTU-029212
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594963
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.51
Jumbo phage	No

Genome content
Genome length	33,656 bps
GC content	55.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.94%
Average CDS length	690.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181185_1	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181185_1	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0181185_1	COG	COG1511	NA	NA
UHGV-0181185_3	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0181185_3	UniRef90	UniRef90_A0A2V2FGW5	XRE family transcriptional regulator	NA
UHGV-0181185_3	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181185_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181185_3	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0181185_4	PHROG	phrog_706	NA	unknown function
UHGV-0181185_4	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0181185_4	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0181185_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181185_4	Structural annotation	PF06854	NA	NA
UHGV-0181185_5	PHROG	phrog_11299	NA	unknown function
UHGV-0181185_5	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0181185_6	PHROG	phrog_3099	NA	unknown function
UHGV-0181185_6	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0181185_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181185_7	PHROG	phrog_3266	tail completion	connector
UHGV-0181185_7	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-0181185_7	Structural annotation	PF12691	NA	NA
UHGV-0181185_8	PHROG	phrog_3366	NA	unknown function
UHGV-0181185_8	eggNOG-mapper	411462.DORLON_00784	NA	NA
UHGV-0181185_8	Pfam	PF20536	NA	DUF6751
UHGV-0181185_8	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0181185_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181185_10	PHROG	phrog_247	major head protein	head and packaging
UHGV-0181185_10	UniRef90	UniRef90_A0A3D5I8U9	Phage coat protein	NA
UHGV-0181185_10	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0181185_10	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0181185_10	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0181185_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181185_11	eggNOG-mapper	665956.HMPREF1032_03067	Phage minor structural protein GP20	NA
UHGV-0181185_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181185_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181185_12	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0181185_12	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0181185_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181185_12	COG	COG2369	NA	NA
UHGV-0181185_12	Structural annotation	PF06152	NA	NA
UHGV-0181185_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181185_13	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0181185_13	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-0181185_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181185_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181185_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181185_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0181185_14	UniRef90	UniRef90_A0A3D5I9U8	PBSX family phage terminase large subunit	NA
UHGV-0181185_14	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0181185_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181185_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0181185_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181185_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181185_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181185_19	Structural annotation	PF03496, MF_04142, NF040688	NA	NA
UHGV-0181185_20	PHROG	phrog_8680	NA	unknown function
UHGV-0181185_20	UniRef90	UniRef90_A0A6L5T7C3	NA	NA
UHGV-0181185_20	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0181185_20	Pfam	PF14386	NA	DUF4417
UHGV-0181185_20	Structural annotation	PF14386	NA	NA
UHGV-0181185_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181185_21	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0181185_21	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0181185_22	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0181185_22	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181185_22	UniRef90	UniRef90_A0A6L5T7C5	ATP-dependent helicase	NA
UHGV-0181185_22	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-0181185_22	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0181185_22	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0181185_22	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0181185_22	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0181185_23	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181185_23	UniRef90	UniRef90_A0A6L5T7N7	VRR-NUC domain-containing protein	NA
UHGV-0181185_23	eggNOG-mapper	411473.RUMCAL_00899	VRR_NUC	NA
UHGV-0181185_23	Structural annotation	PF08774, MF_01490, NF040854, COG1591	NA	NA
UHGV-0181185_24	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181185_24	UniRef90	UniRef90_A0A3D5I927	Virulence-associated protein E	NA
UHGV-0181185_24	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0181185_24	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0181185_24	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0181185_24	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0181185_26	PHROG	phrog_6568	NA	unknown function
UHGV-0181185_26	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0181185_27	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0181185_27	UniRef90	UniRef90_A0A353EYT4	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0181185_27	eggNOG-mapper	1392502.JNIO01000008_gene1606	protein encoded in hypervariable junctions of pilus gene clusters	NA
UHGV-0181185_27	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0181185_30	PHROG	phrog_9958	NA	unknown function
UHGV-0181185_30	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0181185_30	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0181185_30	Structural annotation	PF19789	NA	NA
UHGV-0181185_34	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0181185_34	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0181185_34	UniRef90	UniRef90_A0A2A7ALC5	Flavin-dependent thymidylate synthase	NA
UHGV-0181185_34	eggNOG-mapper	657322.FPR_23400	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0181185_34	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0181185_34	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0181185_34	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0181185_34	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0181185_34	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0181185_35	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0181185_35	eggNOG-mapper	1236504.HMPREF2132_11120	NA	NA
UHGV-0181185_35	Pfam	PF11753	NA	DUF3310
UHGV-0181185_35	Structural annotation	PF11753	NA	NA
UHGV-0181185_36	PHROG	phrog_24386	NA	unknown function
UHGV-0181185_36	eggNOG-mapper	1280668.ATVT01000014_gene205	phosphatase activity	NA
UHGV-0181185_36	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0181185_36	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0181185_39	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0181185_39	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0181185_39	Structural annotation	COG1694	NA	NA
UHGV-0181185_41	KOfam	K24451	zim; modification methylase	NA
UHGV-0181185_41	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0181185_41	UniRef90	UniRef90_UPI000422F384	site-specific DNA-methyltransferase	NA
UHGV-0181185_41	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0181185_41	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0181185_41	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181185_41	COG	COG0863	DNA modification methylase	NA
UHGV-0181185_41	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0181185_42	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0181185_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181185_42	UniRef90	UniRef90_G9X230	Helicase ATP-binding domain-containing protein	NA
UHGV-0181185_42	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0181185_42	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0181185_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0181185_42	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0181185_42	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0181185_43	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0181185_43	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0181185_43	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0181185_43	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0181185_43	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0181185_43	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0181185_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181185_43	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0181185_44	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0181185_44	UniRef90	UniRef90_A0A345KQM6	DNA cytosine methyltransferase	NA
UHGV-0181185_44	eggNOG-mapper	1105031.HMPREF1141_2783	NA	NA
UHGV-0181185_45	UniRef90	UniRef90_A0A8I0H1I5	DNA cytosine methyltransferase	NA
UHGV-0181185_45	eggNOG-mapper	1256908.HMPREF0373_02849	NA	NA