UHGV-0181253

Genome information

Genome length 33,100 bps

CDS count 49

Completeness 86.90% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181253
vOTU ID	vOTU-029216
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580098_a1_ct20926_vs1@Siphoviridae__sp._ct5e01
BioSample	SAMEA2580098
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.42
Jumbo phage	No

Genome content
Genome length	33,100 bps
GC content	38.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.02%
Average CDS length	624.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181253_1	Structural annotation	NF037954	NA	NA
UHGV-0181253_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181253_7	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0181253_7	Structural annotation	PF21578	NA	NA
UHGV-0181253_8	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0181253_8	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0181253_8	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0181253_8	eggNOG-mapper	1121447.JONL01000002_gene2134	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0181253_8	Pfam	PF00075	RNase H	RNase_H
UHGV-0181253_8	COG	COG0328	Ribonuclease HI	NA
UHGV-0181253_8	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0181253_9	Structural annotation	PF19962, NF011863	NA	NA
UHGV-0181253_10	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0181253_11	PHROG	phrog_4433	NA	unknown function
UHGV-0181253_11	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0181253_11	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0181253_11	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0181253_12	PHROG	phrog_8470	NA	unknown function
UHGV-0181253_12	UniRef90	UniRef90_UPI0018999714	PcfJ domain-containing protein	NA
UHGV-0181253_12	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0181253_12	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0181253_12	Structural annotation	PF14284	NA	NA
UHGV-0181253_13	PHROG	phrog_15077	NA	unknown function
UHGV-0181253_13	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0181253_13	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0181253_13	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0181253_17	PHROG	phrog_10714	NA	unknown function
UHGV-0181253_17	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0181253_18	PHROG	phrog_20593	NA	unknown function
UHGV-0181253_18	AcrCatalog	cluster_27421	NA	NA
UHGV-0181253_19	PHROG	phrog_874	NA	unknown function
UHGV-0181253_19	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0181253_19	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0181253_19	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0181253_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181253_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181253_22	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0181253_22	Structural annotation	PF02996	NA	NA
UHGV-0181253_23	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0181253_23	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0181253_23	eggNOG-mapper	320843.Q4ZBS0_9CAUD	DNA packaging	NA
UHGV-0181253_23	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0181253_23	Structural annotation	PF13022	NA	NA
UHGV-0181253_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181253_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0181253_24	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0181253_24	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0181253_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181253_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181253_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181253_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181253_25	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-0181253_25	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0181253_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181253_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181253_26	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-0181253_26	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0181253_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181253_26	Pfam	PF21814	NA	DUF6883
UHGV-0181253_26	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0181253_26	Structural annotation	PF06152	NA	NA
UHGV-0181253_27	UniRef90	UniRef90_F5RJP5	Chaperonin	NA
UHGV-0181253_27	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0181253_27	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0181253_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0181253_28	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0181253_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-0181253_29	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0181253_29	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0181253_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181253_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181253_30	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0181253_31	PHROG	phrog_8710	NA	unknown function
UHGV-0181253_31	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0181253_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0181253_32	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0181253_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0181253_33	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0181253_33	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0181253_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0181253_33	Structural annotation	PF12691	NA	NA
UHGV-0181253_34	PHROG	phrog_820	major tail protein	tail
UHGV-0181253_34	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0181253_34	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0181253_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181253_35	PHROG	phrog_8300	NA	unknown function
UHGV-0181253_35	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0181253_35	Structural annotation	PF06896	NA	NA
UHGV-0181253_36	PHROG	phrog_8355	NA	unknown function
UHGV-0181253_36	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0181253_36	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-0181253_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181253_37	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0181253_37	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0181253_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181253_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0181253_38	PHROG	phrog_1194	NA	unknown function
UHGV-0181253_38	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0181253_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0181253_39	PHROG	phrog_1401	NA	unknown function
UHGV-0181253_39	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0181253_39	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0181253_39	Structural annotation	PF07761	NA	NA
UHGV-0181253_40	PHROG	phrog_6616	tail protein	tail
UHGV-0181253_40	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0181253_40	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0181253_40	COG	COG4926	Phage-related protein	NA
UHGV-0181253_40	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0181253_41	PHROG	phrog_2566	NA	unknown function
UHGV-0181253_44	eggNOG-mapper	536227.CcarbDRAFT_4479	Belongs to the 'phage' integrase family	NA
UHGV-0181253_44	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0181253_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181253_45	PHROG	phrog_199	holin	lysis
UHGV-0181253_45	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0181253_45	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0181253_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0181253_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0181253_45	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0181253_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0181253_46	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0181253_46	PHROG	phrog_3513	endolysin	lysis
UHGV-0181253_46	UniRef90	UniRef90_R5ZWS5	Peptidoglycan hydrolase	NA
UHGV-0181253_46	eggNOG-mapper	1423724.BAMM01000042_gene2173	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0181253_46	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0181253_46	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0181253_46	Pfam	PF01476	LysM domain	LysM
UHGV-0181253_46	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0181253_46	Structural annotation	PF08230, NF004974, COG1705	NA	NA
UHGV-0181253_47	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0181253_47	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0181253_47	UniRef90	UniRef90_A0A1H3VXF8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0181253_47	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0181253_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0181253_47	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0181253_47	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0181253_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0181253_48	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0181253_48	UniRef90	UniRef90_A0A413P9Z2	HicB family protein	NA
UHGV-0181253_48	eggNOG-mapper	1408311.JNJM01000002_gene1307	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0181253_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0181253_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0181253_48	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0181253_49	eggNOG-mapper	1121344.JHZO01000001_gene435	PFAM Manganese containing catalase	NA
UHGV-0181253_49	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA