UHGV-0181312

Genome information

Genome length 54,389 bps

CDS count 89

Completeness 90.08% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181312
vOTU ID	vOTU-073560
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594164
BioSample	SAMN09781758
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.33
Jumbo phage	No

Genome content
Genome length	54,389 bps
GC content	51.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	89
CDS density	92.30%
Average CDS length	567.88 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181312_1	PHROG	phrog_4259	NA	unknown function
UHGV-0181312_1	UniRef90	UniRef90_D4P7B9	Gp008	NA
UHGV-0181312_1	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0181312_3	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181312_3	eggNOG-mapper	428125.CLOLEP_01405	NA	NA
UHGV-0181312_5	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0181312_5	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0181312_5	eggNOG-mapper	665950.HMPREF1025_01991	NA	NA
UHGV-0181312_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181312_7	UniRef90	UniRef90_A0A2J4JS12	Terminase	NA
UHGV-0181312_7	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0181312_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181312_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181312_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181312_7	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0181312_8	UniRef90	UniRef90_A0A374ADQ3	EcsC family protein	NA
UHGV-0181312_8	eggNOG-mapper	702450.CUW_1136	EcsC protein family	NA
UHGV-0181312_8	Pfam	PF12787	EcsC protein family	EcsC
UHGV-0181312_8	Structural annotation	PF12787	NA	NA
UHGV-0181312_9	PHROG	phrog_32444	NA	unknown function
UHGV-0181312_9	eggNOG-mapper	428125.CLOLEP_01408	NA	NA
UHGV-0181312_10	PHROG	phrog_32444	NA	unknown function
UHGV-0181312_10	eggNOG-mapper	428125.CLOLEP_01410	NA	NA
UHGV-0181312_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181312_11	UniRef90	UniRef90_A0A373NV13	Phage portal protein	NA
UHGV-0181312_11	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-0181312_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181312_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181312_12	KOfam	K06904	NA	NA
UHGV-0181312_12	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0181312_12	UniRef90	UniRef90_A0A329URG6	Phage major capsid protein	NA
UHGV-0181312_12	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0181312_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181312_12	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-0181312_14	PHROG	phrog_4270	NA	unknown function
UHGV-0181312_14	eggNOG-mapper	665956.HMPREF1032_00677	NA	NA
UHGV-0181312_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0181312_15	UniRef90	UniRef90_D4P7D8	Structural protein	NA
UHGV-0181312_15	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0181312_15	Structural annotation	PF11367	NA	NA
UHGV-0181312_16	PHROG	phrog_2645	major tail protein	tail
UHGV-0181312_16	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0181312_16	eggNOG-mapper	742733.HMPREF9469_05026	NA	NA
UHGV-0181312_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0181312_17	PHROG	phrog_4282	NA	unknown function
UHGV-0181312_17	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0181312_18	PHROG	phrog_4338	NA	unknown function
UHGV-0181312_18	eggNOG-mapper	742733.HMPREF9469_05023	NA	NA
UHGV-0181312_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181312_19	UniRef90	UniRef90_A0A3E2V879	HK97 gp10 family phage protein	NA
UHGV-0181312_19	eggNOG-mapper	742740.HMPREF9474_02263	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0181312_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0181312_19	Structural annotation	TIGR01725	NA	NA
UHGV-0181312_20	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0181312_20	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0181312_20	UniRef90	UniRef90_A0A3F3JTX1	TMP_3 domain-containing protein	NA
UHGV-0181312_20	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-0181312_20	COG	COG5412	Phage-related protein	NA
UHGV-0181312_21	Structural annotation	PF20195, TIGR02126, COG4722	NA	NA
UHGV-0181312_22	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0181312_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181312_22	Structural annotation	PF20195, PF17993, TIGR01633, COG4722	NA	NA
UHGV-0181312_23	PHROG	phrog_3558	tail protein	tail
UHGV-0181312_23	eggNOG-mapper	1123315.AUIP01000001_gene1435	Prophage endopeptidase tail	NA
UHGV-0181312_23	COG	COG4926	Phage-related protein	NA
UHGV-0181312_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181312_24	PHROG	phrog_9534	head protein	head and packaging
UHGV-0181312_24	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0181312_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0181312_25	PHROG	phrog_29248	NA	unknown function
UHGV-0181312_26	PHROG	phrog_2310	NA	unknown function
UHGV-0181312_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0181312_27	PHROG	phrog_291	endolysin	lysis
UHGV-0181312_27	UniRef90	UniRef90_A0A173W4B0	Autolytic lysozyme	NA
UHGV-0181312_27	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-0181312_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0181312_27	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0181312_27	Structural annotation	PF01183, MF_02227, NF002576, COG3757	NA	NA
UHGV-0181312_28	PHROG	phrog_4105	NA	unknown function
UHGV-0181312_28	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0181312_29	PHROG	phrog_263	holin	lysis
UHGV-0181312_29	UniRef90	UniRef90_A0A3E2V7Z3	Phage holin	NA
UHGV-0181312_29	eggNOG-mapper	718252.FP2_14360	SPP1 phage holin	NA
UHGV-0181312_29	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0181312_29	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0181312_29	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0181312_30	eggNOG-mapper	397290.C810_01326	NA	NA
UHGV-0181312_31	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0181312_32	PHROG	phrog_16490	NA	unknown function
UHGV-0181312_32	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0181312_33	PHROG	phrog_20016	NA	unknown function
UHGV-0181312_33	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0181312_34	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0181312_36	KOfam	K14059	int; integrase	NA
UHGV-0181312_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0181312_36	UniRef90	UniRef90_A0A6N9PA43	Integrase	NA
UHGV-0181312_36	eggNOG-mapper	742733.HMPREF9469_05096	Belongs to the 'phage' integrase family	NA
UHGV-0181312_36	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0181312_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181312_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181312_36	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0181312_37	PHROG	phrog_6058	NA	unknown function
UHGV-0181312_37	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0181312_37	eggNOG-mapper	665956.HMPREF1032_00623	NA	NA
UHGV-0181312_38	PHROG	phrog_11237	NA	unknown function
UHGV-0181312_38	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0181312_41	Structural annotation	PF12659	NA	NA
UHGV-0181312_44	PHROG	phrog_17256	NA	unknown function
UHGV-0181312_44	eggNOG-mapper	742733.HMPREF9469_05087	NA	NA
UHGV-0181312_46	eggNOG-mapper	1410628.JNKS01000030_gene2921	NA	NA
UHGV-0181312_46	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0181312_46	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0181312_47	Structural annotation	PF13291, MF_00659, NF005233, COG3978	NA	NA
UHGV-0181312_48	PHROG	phrog_18243	NA	unknown function
UHGV-0181312_48	UniRef90	UniRef90_A0A416KK26	CTP synthase	NA
UHGV-0181312_52	PHROG	phrog_2152	NA	unknown function
UHGV-0181312_52	UniRef90	UniRef90_UPI001C0099E2	NA	NA
UHGV-0181312_52	eggNOG-mapper	665956.HMPREF1032_00632	NA	NA
UHGV-0181312_52	Pfam	PF19880	NA	DUF6353
UHGV-0181312_52	Structural annotation	PF19880	NA	NA
UHGV-0181312_55	PHROG	phrog_2152	NA	unknown function
UHGV-0181312_55	UniRef90	UniRef90_UPI001D065195	NA	NA
UHGV-0181312_55	eggNOG-mapper	665956.HMPREF1032_00634	NA	NA
UHGV-0181312_55	Pfam	PF19880	NA	DUF6353
UHGV-0181312_55	Structural annotation	PF19880	NA	NA
UHGV-0181312_57	PHROG	phrog_4079	NA	unknown function
UHGV-0181312_57	eggNOG-mapper	411460.RUMTOR_02027	NA	NA
UHGV-0181312_58	PHROG	phrog_2152	NA	unknown function
UHGV-0181312_58	UniRef90	UniRef90_UPI0019578B0D	NA	NA
UHGV-0181312_58	eggNOG-mapper	478749.BRYFOR_08565	NA	NA
UHGV-0181312_58	Pfam	PF19880	NA	DUF6353
UHGV-0181312_58	Structural annotation	PF19880	NA	NA
UHGV-0181312_60	PHROG	phrog_14968	NA	unknown function
UHGV-0181312_60	UniRef90	UniRef90_A0A3E2V7R9	Histidine kinase	NA
UHGV-0181312_60	eggNOG-mapper	742733.HMPREF9469_05071	NA	NA
UHGV-0181312_61	PHROG	phrog_4695	NA	unknown function
UHGV-0181312_61	eggNOG-mapper	665950.HMPREF1025_01953	NA	NA
UHGV-0181312_62	PHROG	phrog_4678	NA	unknown function
UHGV-0181312_62	eggNOG-mapper	428125.CLOLEP_01372	NA	NA
UHGV-0181312_65	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0181312_65	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0181312_65	UniRef90	UniRef90_A0A2J4JS43	SF3 helicase domain-containing protein	NA
UHGV-0181312_65	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0181312_65	Pfam	PF19263	NA	DUF5906
UHGV-0181312_65	Structural annotation	PF00136, PF05272, PF09250, MF_04100, MF_00016, NF005477, NF004420, COG3378, COG0417	NA	NA
UHGV-0181312_66	Structural annotation	PF12643, PF09939, MF_01020, TIGR03188, NF010403, COG3881, COG0140	NA	NA
UHGV-0181312_67	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181312_67	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0181312_68	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0181312_68	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0181312_68	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0181312_69	PHROG	phrog_3777	NA	unknown function
UHGV-0181312_69	UniRef90	UniRef90_A0A2J4JS39	NA	NA
UHGV-0181312_69	eggNOG-mapper	1203606.HMPREF1526_01680	NA	NA
UHGV-0181312_69	Pfam	PF12957	NA	DUF3846
UHGV-0181312_69	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0181312_69	Structural annotation	PF12957	NA	NA
UHGV-0181312_72	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0181312_72	UniRef90	UniRef90_UPI001D08DE3D	DEAD/DEAH box helicase family protein	NA
UHGV-0181312_72	eggNOG-mapper	665956.HMPREF1032_00650	Helicase conserved C-terminal domain	NA
UHGV-0181312_72	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0181312_72	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0181312_72	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0181312_74	PHROG	phrog_18716	NA	unknown function
UHGV-0181312_74	UniRef90	UniRef90_UPI0015EB46BD	NA	NA
UHGV-0181312_74	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0181312_74	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0181312_74	Structural annotation	PF18909, COG1996	NA	NA
UHGV-0181312_75	PHROG	phrog_19852	NA	unknown function
UHGV-0181312_75	eggNOG-mapper	742733.HMPREF9469_05061	NA	NA
UHGV-0181312_77	Structural annotation	PF08863, MF_01077	NA	NA
UHGV-0181312_80	PHROG	phrog_16725	NA	unknown function
UHGV-0181312_84	Structural annotation	PF14120	NA	NA
UHGV-0181312_86	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0181312_86	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0181312_86	UniRef90	UniRef90_A0A3E2V7T8	FAD-dependent thymidylate synthase	NA
UHGV-0181312_86	eggNOG-mapper	397290.C810_05227	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0181312_86	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0181312_86	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0181312_86	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0181312_86	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0181312_88	UniRef90	UniRef90_A0A843GUM6	Membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0181312_88	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0181312_88	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0181312_89	Structural annotation	PF08769	NA	NA