UHGV-0181423

Genome information

Genome length 31,919 bps

CDS count 50

Completeness 91.92% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181423
vOTU ID	vOTU-064293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593915
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.1
Jumbo phage	No

Genome content
Genome length	31,919 bps
GC content	56.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.52%
Average CDS length	587.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181423_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0181423_1	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0181423_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181423_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0181423_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181423_2	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0181423_2	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0181423_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181423_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181423_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181423_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0181423_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181423_3	UniRef90	UniRef90_UPI0018755FA4	phage portal protein	NA
UHGV-0181423_3	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0181423_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181423_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0181423_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181423_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181423_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0181423_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0181423_4	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0181423_4	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0181423_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0181423_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0181423_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0181423_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181423_5	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0181423_5	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0181423_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181423_5	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0181423_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181423_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181423_5	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181423_6	PHROG	phrog_749	NA	unknown function
UHGV-0181423_6	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0181423_7	PHROG	phrog_19734	NA	unknown function
UHGV-0181423_7	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0181423_7	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0181423_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181423_8	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0181423_8	Structural annotation	PF05657	NA	NA
UHGV-0181423_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181423_9	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0181423_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0181423_9	Structural annotation	TIGR01725	NA	NA
UHGV-0181423_10	PHROG	phrog_88	major tail protein	tail
UHGV-0181423_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0181423_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0181423_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0181423_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0181423_12	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181423_12	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0181423_12	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0181423_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0181423_12	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0181423_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181423_13	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0181423_13	eggNOG-mapper	536233.CLO_0897	tail component	NA
UHGV-0181423_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181423_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181423_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0181423_14	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0181423_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0181423_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181423_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181423_14	COG	COG4926	Phage-related protein	NA
UHGV-0181423_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181423_15	PHROG	phrog_1863	NA	unknown function
UHGV-0181423_15	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0181423_16	PHROG	phrog_199	holin	lysis
UHGV-0181423_16	UniRef90	UniRef90_R6DA24	Toxin secretion/phage lysis holin	NA
UHGV-0181423_16	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0181423_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0181423_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0181423_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0181423_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0181423_17	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181423_17	PHROG	phrog_435	endolysin	lysis
UHGV-0181423_17	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0181423_17	eggNOG-mapper	697281.Mahau_0598	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0181423_17	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0181423_17	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0181423_17	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181423_17	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0181423_18	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181423_18	PHROG	phrog_95	integrase	integration and excision
UHGV-0181423_18	UniRef90	UniRef90_A0A352ULE7	Recombinase family protein	NA
UHGV-0181423_18	eggNOG-mapper	693746.OBV_24150	resolvase	NA
UHGV-0181423_18	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181423_18	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181423_18	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0181423_18	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181423_18	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0181423_19	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0181423_19	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0181423_20	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0181423_20	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0181423_20	UniRef90	UniRef90_A0A1Y4S764	BRCT domain-containing protein	NA
UHGV-0181423_20	eggNOG-mapper	177437.HRM2_p00730	EXOIII	NA
UHGV-0181423_20	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0181423_20	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0181423_20	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0181423_20	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0181423_20	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0181423_21	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0181423_21	eggNOG-mapper	1507.HMPREF0262_00424	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181423_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181423_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181423_21	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0181423_24	Structural annotation	PF14947, NF041230, COG3432	NA	NA
UHGV-0181423_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181423_25	UniRef90	UniRef90_A0A7X5D1X3	XRE family transcriptional regulator	NA
UHGV-0181423_25	eggNOG-mapper	97138.C820_00784	sequence-specific DNA binding	NA
UHGV-0181423_25	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181423_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181423_25	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0181423_26	UniRef90	UniRef90_A0A1Y3ZIV9	HTH cro/C1-type domain-containing protein	NA
UHGV-0181423_26	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0181423_26	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0181423_28	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0181423_28	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0181423_28	UniRef90	UniRef90_A0A7W7MAA9	Transcriptional regulator with XRE-family HTH domain	NA
UHGV-0181423_28	eggNOG-mapper	1462526.BN990_02315	Helix-turn-helix domain	NA
UHGV-0181423_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0181423_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181423_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0181423_28	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0181423_29	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181423_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181423_29	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0181423_29	eggNOG-mapper	1232428.CAVO010000052_gene2139	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181423_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181423_29	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0181423_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181423_31	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0181423_31	UniRef90	UniRef90_UPI001BB4836B	helix-turn-helix domain-containing protein	NA
UHGV-0181423_31	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181423_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0181423_31	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0181423_31	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0181423_32	Structural annotation	PF21327	NA	NA
UHGV-0181423_34	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181423_34	UniRef90	UniRef90_UPI0002DD08A7	helix-turn-helix domain-containing protein	NA
UHGV-0181423_34	eggNOG-mapper	693746.OBV_19830	DnaD domain protein	NA
UHGV-0181423_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0181423_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0181423_34	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0181423_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0181423_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0181423_35	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0181423_35	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0181423_35	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0181423_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0181423_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-0181423_35	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0181423_36	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0181423_36	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0181423_36	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0181423_36	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0181423_36	Pfam	PF13614	AAA domain	AAA_31
UHGV-0181423_36	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0181423_36	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0181423_37	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0181423_37	PHROG	phrog_27290	NA	unknown function
UHGV-0181423_37	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0181423_37	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0181423_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0181423_37	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0181423_37	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0181423_41	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0181423_42	PHROG	phrog_3136	NA	unknown function
UHGV-0181423_42	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0181423_42	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0181423_42	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0181423_42	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0181423_48	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181423_48	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0181423_48	Structural annotation	PF01446	NA	NA
UHGV-0181423_49	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0181423_49	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0181423_49	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0181423_49	Structural annotation	PF14205	NA	NA
UHGV-0181423_50	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181423_50	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0181423_50	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0181423_50	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181423_50	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA