UHGV-0181424

Genome information

Genome length 32,135 bps

CDS count 53

Completeness 99.95% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181424
vOTU ID	vOTU-064291
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593913
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.07
Jumbo phage	No

Genome content
Genome length	32,135 bps
GC content	36.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	92.37%
Average CDS length	563.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181424_1	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181424_1	UniRef90	UniRef90_UPI001110A8B0	phage portal protein	NA
UHGV-0181424_1	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0181424_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181424_2	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181424_2	UniRef90	UniRef90_UPI001E5C8078	phage minor capsid protein	NA
UHGV-0181424_2	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0181424_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181424_2	COG	COG2369	NA	NA
UHGV-0181424_2	Structural annotation	PF06152	NA	NA
UHGV-0181424_3	Structural annotation	PF11344	NA	NA
UHGV-0181424_4	PHROG	phrog_3675	NA	unknown function
UHGV-0181424_4	UniRef90	UniRef90_A0A1G4FHU6	YjcQ protein	NA
UHGV-0181424_4	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0181424_4	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0181424_6	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0181424_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0181424_8	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0181424_8	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0181424_8	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0181424_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181424_9	eggNOG-mapper	1234679.BN424_2139	NA	NA
UHGV-0181424_10	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0181424_10	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0181424_10	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0181424_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0181424_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181424_11	UniRef90	UniRef90_A0A6A7K9U7	Minor capsid protein	NA
UHGV-0181424_11	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-0181424_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181424_11	Structural annotation	PF11114	NA	NA
UHGV-0181424_12	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0181424_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0181424_12	Structural annotation	PF12691	NA	NA
UHGV-0181424_13	PHROG	phrog_820	major tail protein	tail
UHGV-0181424_13	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0181424_13	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0181424_13	COG	COG5492	NA	NA
UHGV-0181424_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181424_14	Structural annotation	PF10666	NA	NA
UHGV-0181424_15	PHROG	phrog_706	NA	unknown function
UHGV-0181424_15	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-0181424_15	eggNOG-mapper	1462526.BN990_03884	Bacteriophage Gp15 protein	NA
UHGV-0181424_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181424_15	Structural annotation	PF06854	NA	NA
UHGV-0181424_16	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0181424_16	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0181424_16	eggNOG-mapper	1347392.CCEZ01000015_gene2830	tape measure	NA
UHGV-0181424_16	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0181424_16	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0181424_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181424_17	PHROG	phrog_1194	NA	unknown function
UHGV-0181424_17	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-0181424_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0181424_18	PHROG	phrog_13879	NA	unknown function
UHGV-0181424_18	eggNOG-mapper	665956.HMPREF1032_03055	NA	NA
UHGV-0181424_18	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0181424_19	PHROG	phrog_18725	NA	unknown function
UHGV-0181424_19	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0181424_19	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0181424_24	eggNOG-mapper	97138.C820_00591	NA	NA
UHGV-0181424_25	PHROG	phrog_13256	NA	unknown function
UHGV-0181424_25	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0181424_26	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0181424_26	UniRef90	UniRef90_R7ARZ7	NlpC/P60 domain-containing protein	NA
UHGV-0181424_26	eggNOG-mapper	742735.HMPREF9467_02997	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0181424_26	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0181424_26	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0181424_26	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0181424_27	KOfam	K01371	CTSK; cathepsin K [EC:3.4.22.38]	NA
UHGV-0181424_27	PHROG	phrog_16701	peptidase	other
UHGV-0181424_27	UniRef90	UniRef90_A0A396NGZ7	Pept_C1 domain-containing protein	NA
UHGV-0181424_27	eggNOG-mapper	366394.Smed_6088	Papain family cysteine protease	NA
UHGV-0181424_27	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0181424_27	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0181424_27	COG	COG3831	WGR domain, predicted DNA-binding domain in MolR	NA
UHGV-0181424_27	Structural annotation	PF07833, PF00112, COG4870	NA	NA
UHGV-0181424_28	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0181424_28	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181424_28	UniRef90	UniRef90_A0A396NX14	Endonuclease	NA
UHGV-0181424_28	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0181424_28	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0181424_28	COG	COG4748	NA	NA
UHGV-0181424_28	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0181424_29	KOfam	K07482	K07482; transposase, IS30 family	NA
UHGV-0181424_29	PHROG	phrog_4646	transposase	integration and excision
UHGV-0181424_29	UniRef90	UniRef90_R5BP11	Integrase catalytic domain-containing protein	NA
UHGV-0181424_29	eggNOG-mapper	411459.RUMOBE_01705	COG COG2826 Transposase and inactivated derivatives, IS30 family	NA
UHGV-0181424_29	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0181424_29	NCBIFam	NF033563.0	IS30 family transposase	NA
UHGV-0181424_29	COG	COG2826	Transposase and inactivated derivatives, IS30 family	NA
UHGV-0181424_29	Structural annotation	PF13358, PF13384, NF033563, COG2826	NA	NA
UHGV-0181424_33	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181424_33	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0181424_33	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0181424_33	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0181424_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0181424_34	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0181424_34	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0181424_34	Structural annotation	PF05772	NA	NA
UHGV-0181424_35	PHROG	phrog_29930	NA	unknown function
UHGV-0181424_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181424_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181424_36	UniRef90	UniRef90_UPI00101D94AD	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0181424_36	eggNOG-mapper	272563.CD630_29310	Endodeoxyribonuclease RusA	NA
UHGV-0181424_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181424_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181424_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0181424_37	PHROG	phrog_4973	NA	unknown function
UHGV-0181424_37	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0181424_37	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0181424_37	Structural annotation	PF14090, TIGR00373, COG5625	NA	NA
UHGV-0181424_38	PHROG	phrog_15768	NA	unknown function
UHGV-0181424_38	UniRef90	UniRef90_UPI000E525AC6	NA	NA
UHGV-0181424_38	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0181424_38	AcrCatalog	cluster_38323	NA	NA
UHGV-0181424_38	Pfam	PF19808	NA	DUF6291
UHGV-0181424_38	Structural annotation	PF19808	NA	NA
UHGV-0181424_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181424_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181424_39	UniRef90	UniRef90_UPI00196118A2	single-stranded DNA-binding protein	NA
UHGV-0181424_39	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0181424_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181424_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181424_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181424_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181424_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0181424_40	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0181424_40	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0181424_41	PHROG	phrog_4433	NA	unknown function
UHGV-0181424_41	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0181424_44	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0181424_44	UniRef90	UniRef90_A0A2X3IMH1	NA	NA
UHGV-0181424_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181424_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181424_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181424_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181424_47	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0181424_47	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0181424_47	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181424_47	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0181424_48	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0181424_48	UniRef90	UniRef90_UPI001C5FAD45	DNA adenine methylase	NA
UHGV-0181424_48	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0181424_48	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0181424_48	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0181424_48	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0181424_49	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0181424_49	eggNOG-mapper	1410633.JHWR01000006_gene1084	Filamentation induced by cAMP protein fic	NA
UHGV-0181424_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0181424_49	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0181424_49	COG	COG3177	Fic family protein	NA
UHGV-0181424_51	PHROG	phrog_2412	NA	unknown function
UHGV-0181424_51	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-0181424_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181424_52	PHROG	phrog_29775	NA	unknown function
UHGV-0181424_52	UniRef90	UniRef90_UPI000C84204B	PBSX family phage terminase large subunit	NA
UHGV-0181424_52	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0181424_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181424_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181424_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181424_52	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181424_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181424_53	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-0181424_53	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0181424_53	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6