UHGV-0181425

Genome information

Genome length 31,829 bps

CDS count 54

Completeness 85.43% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181425
vOTU ID	vOTU-022579
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593917
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.08
Jumbo phage	No

Genome content
Genome length	31,829 bps
GC content	57.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.36%
Average CDS length	541.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181425_1	PHROG	phrog_38832	NA	unknown function
UHGV-0181425_1	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0181425_1	Structural annotation	PF09629	NA	NA
UHGV-0181425_2	PHROG	phrog_22543	NA	unknown function
UHGV-0181425_2	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0181425_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181425_9	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0181425_9	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0181425_10	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181425_10	UniRef90	UniRef90_A0A316P1K8	HNH endonuclease	NA
UHGV-0181425_10	eggNOG-mapper	642492.Clole_0739	HNH nucleases	NA
UHGV-0181425_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0181425_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181425_11	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0181425_11	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0181425_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181425_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181425_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181425_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181425_11	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0181425_12	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0181425_12	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0181425_12	UniRef90	UniRef90_UPI001E30CE28	site-specific DNA-methyltransferase	NA
UHGV-0181425_12	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0181425_12	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0181425_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181425_12	COG	COG0863	DNA modification methylase	NA
UHGV-0181425_12	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0181425_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181425_13	UniRef90	UniRef90_A0A1D7MMF9	Phage portal protein	NA
UHGV-0181425_13	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0181425_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181425_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181425_13	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0181425_14	KOfam	K06904	NA	NA
UHGV-0181425_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0181425_14	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0181425_14	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0181425_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0181425_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0181425_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0181425_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0181425_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181425_15	UniRef90	UniRef90_A0A2N1PHH4	Phage major capsid protein	NA
UHGV-0181425_15	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0181425_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181425_15	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0181425_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181425_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181425_16	PHROG	phrog_2550	NA	unknown function
UHGV-0181425_16	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0181425_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0181425_17	PHROG	phrog_19734	NA	unknown function
UHGV-0181425_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181425_18	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0181425_19	Structural annotation	TIGR01725	NA	NA
UHGV-0181425_20	PHROG	phrog_88	major tail protein	tail
UHGV-0181425_20	UniRef90	UniRef90_A0A224B030	Phi13 family phage major tail protein	NA
UHGV-0181425_20	eggNOG-mapper	1121334.KB911068_gene2296	phage major tail protein, phi13 family	NA
UHGV-0181425_20	COG	COG5492	NA	NA
UHGV-0181425_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0181425_21	Structural annotation	PF11836	NA	NA
UHGV-0181425_22	PHROG	phrog_13338	NA	unknown function
UHGV-0181425_22	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0181425_22	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0181425_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0181425_22	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0181425_23	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0181425_23	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0181425_23	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0181425_23	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0181425_24	PHROG	phrog_26795	NA	unknown function
UHGV-0181425_24	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0181425_24	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0181425_24	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0181425_25	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0181425_26	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0181425_28	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0181425_28	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0181425_29	eggNOG-mapper	665956.HMPREF1032_03054	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0181425_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0181425_30	PHROG	phrog_37900	NA	unknown function
UHGV-0181425_30	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0181425_30	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0181425_30	Pfam	PF19789	NA	DUF6273
UHGV-0181425_30	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0181425_30	Structural annotation	PF19789	NA	NA
UHGV-0181425_31	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0181425_31	UniRef90	UniRef90_K1UI43	NA	NA
UHGV-0181425_31	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0181425_31	Pfam	PF19789	NA	DUF6273
UHGV-0181425_31	Structural annotation	PF19789	NA	NA
UHGV-0181425_32	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0181425_33	PHROG	phrog_937	hemolysin	other
UHGV-0181425_35	PHROG	phrog_13256	NA	unknown function
UHGV-0181425_35	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0181425_36	PHROG	phrog_14030	NA	unknown function
UHGV-0181425_36	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-0181425_36	eggNOG-mapper	1095750.HMPREF9970_2291	repeat protein	NA
UHGV-0181425_36	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0181425_37	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0181425_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181425_38	UniRef90	UniRef90_UPI00195ADA30	AP2 domain-containing protein	NA
UHGV-0181425_38	eggNOG-mapper	375286.mma_2189	NA	NA
UHGV-0181425_38	Structural annotation	PF17375	NA	NA
UHGV-0181425_39	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0181425_39	Structural annotation	PF10723	NA	NA
UHGV-0181425_44	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0181425_44	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0181425_45	KOfam	K14059	int; integrase	NA
UHGV-0181425_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0181425_45	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0181425_45	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0181425_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0181425_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181425_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181425_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0181425_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181425_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181425_46	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0181425_47	eggNOG-mapper	622312.ROSEINA2194_02761	NOG18738 non supervised orthologous group	NA
UHGV-0181425_47	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0181425_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181425_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181425_48	UniRef90	UniRef90_A0A0R1SHI5	Helix-turn-helix XRE-family transcriptional regulator	NA
UHGV-0181425_48	eggNOG-mapper	748224.HMPREF9436_01983	DNA-binding helix-turn-helix protein	NA
UHGV-0181425_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181425_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0181425_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181425_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181425_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181425_49	UniRef90	UniRef90_A0A3D1VD81	XRE family transcriptional regulator	NA
UHGV-0181425_49	eggNOG-mapper	1203602.HMPREF1527_01032	sequence-specific DNA binding	NA
UHGV-0181425_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181425_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181425_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181425_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0181425_51	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0181425_52	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0181425_52	UniRef90	UniRef90_UPI00195923B7	helix-turn-helix transcriptional regulator	NA
UHGV-0181425_52	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181425_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181425_52	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0181425_52	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0181425_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181425_54	UniRef90	UniRef90_A0A075KJL8	Putative DNA replication protein	NA
UHGV-0181425_54	eggNOG-mapper	862514.HMPREF0623_0270	Helix-turn-helix domain	NA
UHGV-0181425_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0181425_54	COG	COG3935	DNA replication protein DnaD	NA