UHGV-0181428

Genome information

Genome length 31,366 bps

CDS count 50

Completeness 80.55% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181428
vOTU ID	vOTU-029231
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593919
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.8
Jumbo phage	No

Genome content
Genome length	31,366 bps
GC content	52.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.07%
Average CDS length	568.38 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181428_1	PHROG	phrog_8448	anti-repressor	transcription regulation
UHGV-0181428_1	eggNOG-mapper	397290.C810_01421	ORF6C domain	NA
UHGV-0181428_1	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0181428_1	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0181428_2	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0181428_2	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0181428_2	Structural annotation	PF13542	NA	NA
UHGV-0181428_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181428_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0181428_3	UniRef90	UniRef90_A0A3A6EEP8	PBSX family phage terminase large subunit	NA
UHGV-0181428_3	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0181428_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181428_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181428_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181428_3	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181428_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181428_4	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0181428_4	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0181428_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181428_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181428_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181428_5	UniRef90	UniRef90_UPI001966DE3B	phage minor capsid protein	NA
UHGV-0181428_5	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0181428_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181428_5	COG	COG2369	NA	NA
UHGV-0181428_5	Structural annotation	PF06152	NA	NA
UHGV-0181428_7	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181428_7	UniRef90	UniRef90_A0A396KBA8	AP2 domain-containing protein	NA
UHGV-0181428_7	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0181428_7	Structural annotation	PF10729, MF_01580, NF007510	NA	NA
UHGV-0181428_8	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181428_8	UniRef90	UniRef90_A0A3D0XVN5	Capsid protein (Fragment)	NA
UHGV-0181428_8	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0181428_8	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181428_8	COG	COG2369	NA	NA
UHGV-0181428_10	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0181428_10	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0181428_10	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0181428_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181428_11	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0181428_11	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0181428_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181428_11	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0181428_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0181428_12	UniRef90	UniRef90_UPI000C7D9661	phage capsid protein	NA
UHGV-0181428_12	eggNOG-mapper	1117108.PAALTS15_13567	NA	NA
UHGV-0181428_12	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0181428_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181428_14	PHROG	phrog_3366	NA	unknown function
UHGV-0181428_14	Pfam	PF20536	NA	DUF6751
UHGV-0181428_14	Structural annotation	PF20536	NA	NA
UHGV-0181428_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181428_15	UniRef90	UniRef90_D4K441	Minor capsid	NA
UHGV-0181428_15	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-0181428_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181428_15	Structural annotation	PF11114	NA	NA
UHGV-0181428_16	PHROG	phrog_3266	tail completion	connector
UHGV-0181428_16	UniRef90	UniRef90_UPI001F2730AA	chloramphenicol resistance protein	NA
UHGV-0181428_16	eggNOG-mapper	632245.CLP_1653	NA	NA
UHGV-0181428_16	Structural annotation	PF12691	NA	NA
UHGV-0181428_17	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0181428_17	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0181428_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181428_18	PHROG	phrog_4450	NA	unknown function
UHGV-0181428_18	Structural annotation	PF20378	NA	NA
UHGV-0181428_19	PHROG	phrog_706	NA	unknown function
UHGV-0181428_19	UniRef90	UniRef90_UPI0011AF1F88	Gp15 family bacteriophage protein	NA
UHGV-0181428_19	eggNOG-mapper	663278.Ethha_0489	Bacteriophage Gp15 protein	NA
UHGV-0181428_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181428_19	Structural annotation	PF06854	NA	NA
UHGV-0181428_20	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0181428_20	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0181428_20	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0181428_20	eggNOG-mapper	1111131.HMPREF1255_1479	phage tail tape measure protein	NA
UHGV-0181428_20	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0181428_20	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0181428_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181428_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0181428_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181428_21	UniRef90	UniRef90_R6N293	Putative phage tail component domain protein	NA
UHGV-0181428_21	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181428_22	PHROG	phrog_18110	NA	unknown function
UHGV-0181428_22	UniRef90	UniRef90_A0A1Y3TWK1	Prophage_tail domain-containing protein	NA
UHGV-0181428_22	eggNOG-mapper	272562.CA_C1879	Phage minor structural protein	NA
UHGV-0181428_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181428_22	COG	COG4926	Phage-related protein	NA
UHGV-0181428_22	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0181428_23	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0181428_23	eggNOG-mapper	1499683.CCFF01000005_gene81	NA	NA
UHGV-0181428_23	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0181428_23	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0181428_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0181428_24	PHROG	phrog_291	endolysin	lysis
UHGV-0181428_24	UniRef90	UniRef90_UPI001D0EE7D8	glycoside hydrolase family 25 protein	NA
UHGV-0181428_24	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0181428_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0181428_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0181428_24	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0181428_25	PHROG	phrog_4105	NA	unknown function
UHGV-0181428_25	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0181428_26	PHROG	phrog_263	holin	lysis
UHGV-0181428_26	UniRef90	UniRef90_A0A329UCA4	Phage holin	NA
UHGV-0181428_26	eggNOG-mapper	411483.FAEPRAA2165_00003	SPP1 phage holin	NA
UHGV-0181428_26	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0181428_26	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0181428_26	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0181428_28	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0181428_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0181428_29	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0181428_29	UniRef90	UniRef90_UPI001E2ADABC	phage regulatory protein/antirepressor Ant	NA
UHGV-0181428_29	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0181428_29	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0181428_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0181428_29	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0181428_29	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0181428_30	Structural annotation	PF07342	NA	NA
UHGV-0181428_31	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0181428_31	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0181428_31	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0181428_31	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0181428_33	PHROG	phrog_22984	NA	unknown function
UHGV-0181428_34	PHROG	phrog_16490	NA	unknown function
UHGV-0181428_34	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0181428_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181428_37	KOfam	K14059	int; integrase	NA
UHGV-0181428_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0181428_37	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0181428_37	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0181428_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181428_37	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181428_37	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0181428_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181428_38	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0181428_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181428_38	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0181428_41	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-0181428_41	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-0181428_45	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0181428_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181428_45	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0181428_45	eggNOG-mapper	1321372.AQQB01000060_gene35	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181428_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181428_45	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0181428_46	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0181428_46	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0181428_47	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0181428_47	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0181428_47	eggNOG-mapper	476272.RUMHYD_03308	BRO family, N-terminal domain	NA
UHGV-0181428_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181428_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0181428_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0181428_47	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0181428_50	PHROG	phrog_4433	NA	unknown function
UHGV-0181428_50	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0181428_50	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0181428_50	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0181428_50	Structural annotation	NF000318	NA	NA