UHGV-0181430

Genome information

Genome length 30,810 bps

CDS count 55

Completeness 93.22% (high-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181430
vOTU ID	vOTU-069282
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_593921
BioSample	SAMN09781755
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.04
Jumbo phage	No

Genome content
Genome length	30,810 bps
GC content	54.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	94.75%
Average CDS length	536.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181430_1	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0181430_1	UniRef90	UniRef90_UPI0004135207	P27 family phage terminase small subunit	NA
UHGV-0181430_1	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0181430_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181430_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0181430_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181430_2	UniRef90	UniRef90_A0A2V2GQ67	Terminase	NA
UHGV-0181430_2	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0181430_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181430_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181430_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181430_2	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0181430_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181430_3	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0181430_3	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0181430_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181430_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0181430_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181430_3	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0181430_4	KOfam	K06904	NA	NA
UHGV-0181430_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0181430_4	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0181430_4	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0181430_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0181430_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0181430_4	COG	COG3740	Phage head maturation protease	NA
UHGV-0181430_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0181430_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181430_5	UniRef90	UniRef90_A0A1C6H720	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181430_5	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0181430_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181430_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181430_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181430_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181430_6	PHROG	phrog_2550	NA	unknown function
UHGV-0181430_6	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0181430_6	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0181430_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0181430_7	PHROG	phrog_19734	NA	unknown function
UHGV-0181430_7	UniRef90	UniRef90_A0A3E3E563	Head-tail adaptor protein	NA
UHGV-0181430_7	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0181430_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181430_8	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0181430_8	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0181430_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181430_9	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0181430_9	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0181430_9	Structural annotation	TIGR01725	NA	NA
UHGV-0181430_10	PHROG	phrog_88	major tail protein	tail
UHGV-0181430_10	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0181430_10	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0181430_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0181430_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181430_13	UniRef90	UniRef90_A0A373CK98	PblA (Fragment)	NA
UHGV-0181430_13	eggNOG-mapper	573061.Clocel_3967	tape measure	NA
UHGV-0181430_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0181430_13	Structural annotation	COG5280	NA	NA
UHGV-0181430_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181430_14	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0181430_14	eggNOG-mapper	1415774.U728_1243	NA	NA
UHGV-0181430_14	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0181430_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181430_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181430_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0181430_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0181430_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0181430_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181430_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181430_15	COG	COG4926	Phage-related protein	NA
UHGV-0181430_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181430_18	PHROG	phrog_16573	NA	unknown function
UHGV-0181430_18	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0181430_19	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0181430_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0181430_24	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0181430_24	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0181430_24	Pfam	PF14359	NA	DUF4406
UHGV-0181430_24	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0181430_25	PHROG	phrog_14030	NA	unknown function
UHGV-0181430_25	UniRef90	UniRef90_A0A316NTC6	PG_binding_1 domain-containing protein	NA
UHGV-0181430_25	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0181430_25	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0181430_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0181430_25	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0181430_25	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0181430_26	PHROG	phrog_199	holin	lysis
UHGV-0181430_26	UniRef90	UniRef90_A0A3C0NPD5	Holin	NA
UHGV-0181430_26	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0181430_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0181430_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0181430_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0181430_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0181430_27	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181430_27	PHROG	phrog_95	integrase	integration and excision
UHGV-0181430_27	UniRef90	UniRef90_UPI00106696FE	recombinase family protein	NA
UHGV-0181430_27	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0181430_27	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181430_27	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181430_27	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0181430_27	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181430_27	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0181430_28	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0181430_28	UniRef90	UniRef90_UPI0019616193	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0181430_28	eggNOG-mapper	397287.C807_03671	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0181430_28	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0181430_28	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0181430_28	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0181430_29	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0181430_29	UniRef90	UniRef90_A0A3E3K2T1	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0181430_29	eggNOG-mapper	502558.EGYY_24930	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0181430_29	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0181430_29	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0181430_29	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0181430_30	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0181430_32	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0181430_32	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0181430_32	UniRef90	UniRef90_A0A1Q6RKG1	HTH cro/C1-type domain-containing protein	NA
UHGV-0181430_32	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0181430_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181430_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181430_32	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181430_43	PHROG	phrog_824	NA	unknown function
UHGV-0181430_43	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0181430_43	eggNOG-mapper	665956.HMPREF1032_00132	VRR_NUC	NA
UHGV-0181430_43	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0181430_44	PHROG	phrog_24518	NA	unknown function
UHGV-0181430_44	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0181430_45	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0181430_45	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0181430_45	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0181430_45	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0181430_45	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0181430_45	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0181430_45	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0181430_45	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181430_45	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0181430_47	PHROG	phrog_924	NA	unknown function
UHGV-0181430_47	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0181430_47	Pfam	PF04448	NA	DUF551
UHGV-0181430_47	Structural annotation	NF041588	NA	NA
UHGV-0181430_52	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181430_52	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0181430_52	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0181430_54	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0181430_54	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0181430_55	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181430_55	UniRef90	UniRef90_A0A0D8IV26	HNH endonuclease	NA
UHGV-0181430_55	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0181430_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181430_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA