UHGV-0181487

Genome information

vOTU vOTU-019800

Genome length 32,965 bps

CDS count 60

Completeness 88.17% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181487
vOTU ID	vOTU-019800
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMN00791912_a1_ct18348_vs1@linear@Siphoviridae__sp._ctMZr1
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.62
Jumbo phage	No

Genome content
Genome length	32,965 bps
GC content	37.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.99%
Average CDS length	521.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181487_1	KOfam	K02887	RP-L20, MRPL20, rplT; large subunit ribosomal protein L20	NA
UHGV-0181487_1	PHROG	phrog_19526	NA	unknown function
UHGV-0181487_1	UniRef90	UniRef90_A0A174UYL9	50S ribosomal protein L20	NA
UHGV-0181487_1	eggNOG-mapper	537007.BLAHAN_06859	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit	NA
UHGV-0181487_1	Pfam	PF00453	Ribosomal protein L20	Ribosomal_L20
UHGV-0181487_1	NCBIFam	TIGR01032.1	50S ribosomal protein L20	NA
UHGV-0181487_1	COG	COG0292	Ribosomal protein L20	NA
UHGV-0181487_2	KOfam	K14059	int; integrase	NA
UHGV-0181487_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0181487_2	UniRef90	UniRef90_UPI00093149AF	site-specific integrase	NA
UHGV-0181487_2	eggNOG-mapper	585394.RHOM_14030	Belongs to the 'phage' integrase family	NA
UHGV-0181487_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0181487_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181487_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181487_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0181487_3	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0181487_3	PHROG	phrog_8036	NA	unknown function
UHGV-0181487_3	UniRef90	UniRef90_A0A6N2UQZ1	DNA-damage-inducible protein D	NA
UHGV-0181487_3	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0181487_3	AcrCatalog	cluster_17589	NA	NA
UHGV-0181487_3	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0181487_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181487_3	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0181487_3	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0181487_3	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0181487_4	PHROG	phrog_1847	NA	unknown function
UHGV-0181487_4	UniRef90	UniRef90_A0A174D4Z6	T5orf172 domain	NA
UHGV-0181487_4	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0181487_4	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0181487_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0181487_4	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0181487_5	PHROG	phrog_20886	NA	unknown function
UHGV-0181487_5	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0181487_5	eggNOG-mapper	411462.DORLON_00820	NA	NA
UHGV-0181487_5	Structural annotation	PF06114	NA	NA
UHGV-0181487_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181487_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181487_6	UniRef90	UniRef90_A0A374AG00	XRE family transcriptional regulator	NA
UHGV-0181487_6	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-0181487_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181487_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0181487_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181487_7	UniRef90	UniRef90_UPI000C762163	helix-turn-helix domain-containing protein	NA
UHGV-0181487_7	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0181487_7	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0181487_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0181487_10	UniRef90	UniRef90_A0A350S1U6	DNA-binding protein	NA
UHGV-0181487_10	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0181487_11	PHROG	phrog_30860	NA	unknown function
UHGV-0181487_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0181487_13	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0181487_13	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0181487_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0181487_13	Structural annotation	PF05565	NA	NA
UHGV-0181487_14	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0181487_15	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181487_15	UniRef90	UniRef90_A0A173R9Q6	AAA domain-containing protein	NA
UHGV-0181487_15	eggNOG-mapper	476272.RUMHYD_03897	AAA domain	NA
UHGV-0181487_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0181487_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0181487_16	PHROG	phrog_18107	NA	unknown function
UHGV-0181487_16	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0181487_16	Structural annotation	PF05037	NA	NA
UHGV-0181487_17	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0181487_17	UniRef90	UniRef90_R6RH17	ERCC4 domain-containing protein	NA
UHGV-0181487_17	eggNOG-mapper	397290.C810_05169	ERCC4 domain	NA
UHGV-0181487_17	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0181487_17	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0181487_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0181487_18	PHROG	phrog_11992	NA	unknown function
UHGV-0181487_18	UniRef90	UniRef90_A0A1Y4F273	DNA primase	NA
UHGV-0181487_18	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0181487_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0181487_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0181487_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0181487_18	Structural annotation	PF01807	NA	NA
UHGV-0181487_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0181487_19	UniRef90	UniRef90_A0A7U9JR13	DNA/RNA helicase, superfamily II	NA
UHGV-0181487_19	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0181487_19	Pfam	PF06048	NA	DUF927
UHGV-0181487_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0181487_19	COG	COG5519	NA	NA
UHGV-0181487_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0181487_21	PHROG	phrog_17690	NA	unknown function
UHGV-0181487_21	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0181487_21	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0181487_22	PHROG	phrog_5070	NA	unknown function
UHGV-0181487_22	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0181487_22	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0181487_22	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0181487_22	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0181487_23	Structural annotation	PF17399	NA	NA
UHGV-0181487_24	PHROG	phrog_37410	NA	unknown function
UHGV-0181487_24	Structural annotation	PF08169, NF037951, COG1918	NA	NA
UHGV-0181487_26	PHROG	phrog_10714	NA	unknown function
UHGV-0181487_27	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0181487_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0181487_27	UniRef90	UniRef90_UPI0012B5467F	Lar family restriction alleviation protein	NA
UHGV-0181487_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0181487_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0181487_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0181487_27	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0181487_30	PHROG	phrog_8684	NA	unknown function
UHGV-0181487_30	UniRef90	UniRef90_G5HEN9	YopX domain-containing protein	NA
UHGV-0181487_30	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0181487_30	Pfam	PF09643	YopX protein	YopX
UHGV-0181487_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0181487_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0181487_33	PHROG	phrog_15198	NA	unknown function
UHGV-0181487_33	UniRef90	UniRef90_A0A2N5P5E2	NA	NA
UHGV-0181487_33	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0181487_33	Pfam	PF04448	NA	DUF551
UHGV-0181487_35	PHROG	phrog_6568	NA	unknown function
UHGV-0181487_36	PHROG	phrog_11237	NA	unknown function
UHGV-0181487_36	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0181487_37	UniRef90	UniRef90_F7JKT1	C2H2-type domain-containing protein	NA
UHGV-0181487_38	PHROG	phrog_20533	NA	unknown function
UHGV-0181487_38	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0181487_38	eggNOG-mapper	521097.Coch_0894	NA	NA
UHGV-0181487_38	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0181487_39	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0181487_39	UniRef90	UniRef90_A0A3E3JYC5	Helix-turn-helix domain-containing protein	NA
UHGV-0181487_39	eggNOG-mapper	411468.CLOSCI_00294	transposase activity	NA
UHGV-0181487_39	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0181487_39	Structural annotation	PF07141	NA	NA
UHGV-0181487_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181487_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0181487_40	UniRef90	UniRef90_S2Z471	PBSX family phage terminase, large subunit	NA
UHGV-0181487_40	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0181487_40	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181487_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181487_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181487_40	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181487_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181487_41	UniRef90	UniRef90_A7B3T1	Putative phage minor capsid protein	NA
UHGV-0181487_41	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0181487_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181487_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181487_42	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0181487_42	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0181487_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181487_42	COG	COG2369	NA	NA
UHGV-0181487_42	Structural annotation	PF06152	NA	NA
UHGV-0181487_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0181487_43	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0181487_43	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0181487_43	Pfam	PF14359	NA	DUF4406
UHGV-0181487_43	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0181487_44	PHROG	phrog_13199	NA	unknown function
UHGV-0181487_44	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0181487_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181487_45	UniRef90	UniRef90_A5KPA4	Phage minor structural protein GP20	NA
UHGV-0181487_45	eggNOG-mapper	411470.RUMGNA_02218	COG NOG36366 non supervised orthologous group	NA
UHGV-0181487_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181487_45	Structural annotation	PF06810	NA	NA
UHGV-0181487_46	PHROG	phrog_422	major head protein	head and packaging
UHGV-0181487_46	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0181487_46	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0181487_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181487_47	eggNOG-mapper	1235792.C808_05369	NA	NA
UHGV-0181487_47	Structural annotation	PF05135	NA	NA
UHGV-0181487_48	PHROG	phrog_3366	NA	unknown function
UHGV-0181487_48	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0181487_48	Pfam	PF20536	NA	DUF6751
UHGV-0181487_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0181487_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181487_49	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0181487_49	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0181487_49	Structural annotation	PF11114	NA	NA
UHGV-0181487_50	PHROG	phrog_3266	tail completion	connector
UHGV-0181487_50	eggNOG-mapper	658655.HMPREF0988_02556	NA	NA
UHGV-0181487_50	Structural annotation	PF12691	NA	NA
UHGV-0181487_51	PHROG	phrog_3099	NA	unknown function
UHGV-0181487_51	eggNOG-mapper	658655.HMPREF0988_02555	NA	NA
UHGV-0181487_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0181487_52	PHROG	phrog_4450	NA	unknown function
UHGV-0181487_52	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0181487_52	Pfam	PF20378	NA	DUF6673
UHGV-0181487_52	Structural annotation	PF20378	NA	NA
UHGV-0181487_53	PHROG	phrog_706	NA	unknown function
UHGV-0181487_53	UniRef90	UniRef90_R6NIL0	Bacteriophage Gp15 protein	NA
UHGV-0181487_53	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0181487_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181487_53	Structural annotation	PF06854	NA	NA
UHGV-0181487_54	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181487_54	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0181487_54	COG	COG1511	NA	NA
UHGV-0181487_55	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181487_55	eggNOG-mapper	658655.HMPREF0988_02551	NA	NA
UHGV-0181487_55	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0181487_56	PHROG	phrog_538	minor tail protein	tail
UHGV-0181487_56	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0181487_56	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0181487_56	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0181487_57	PHROG	phrog_25635	NA	unknown function
UHGV-0181487_57	eggNOG-mapper	411462.DORLON_00774	NA	NA
UHGV-0181487_57	Structural annotation	PF18573, PF20747, NF033147	NA	NA
UHGV-0181487_58	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0181487_60	PHROG	phrog_16164	NA	unknown function
UHGV-0181487_60	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0181487_60	Structural annotation	PF10651, NF032891	NA	NA