UHGV-0181628

Genome information

Genome length 19,681 bps

CDS count 29

Completeness 59.73% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181628
vOTU ID	vOTU-029245
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596007
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.65
Jumbo phage	No

Genome content
Genome length	19,681 bps
GC content	58.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.21%
Average CDS length	657.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181628_1	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0181628_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181628_4	PHROG	phrog_22984	NA	unknown function
UHGV-0181628_5	Structural annotation	PF20477, NF033819	NA	NA
UHGV-0181628_6	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0181628_6	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0181628_6	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0181628_6	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0181628_7	PHROG	phrog_1129	holin	lysis
UHGV-0181628_7	UniRef90	UniRef90_UPI0010313BC1	phage holin family protein	NA
UHGV-0181628_7	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0181628_7	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0181628_7	Structural annotation	PF06946	NA	NA
UHGV-0181628_8	UniRef90	UniRef90_A0A3E2WI44	Branched-chain amino acid ABC transporter permease	NA
UHGV-0181628_8	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0181628_9	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0181628_9	PHROG	phrog_14030	NA	unknown function
UHGV-0181628_9	UniRef90	UniRef90_A0A1H3WNH8	Peptidoglycan hydrolase	NA
UHGV-0181628_9	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0181628_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0181628_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0181628_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0181628_9	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-0181628_10	PHROG	phrog_27545	NA	unknown function
UHGV-0181628_10	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0181628_10	eggNOG-mapper	1122971.BAME01000151_gene6566	NA	NA
UHGV-0181628_12	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0181628_13	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0181628_14	Structural annotation	PF00041, NF010681, COG3979	NA	NA
UHGV-0181628_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0181628_15	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0181628_15	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0181628_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181628_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181628_15	COG	COG4926	Phage-related protein	NA
UHGV-0181628_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181628_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181628_16	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0181628_16	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0181628_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181628_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181628_17	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0181628_19	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0181628_20	PHROG	phrog_88	major tail protein	tail
UHGV-0181628_20	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0181628_20	eggNOG-mapper	349161.Dred_2600	NA	NA
UHGV-0181628_20	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0181628_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181628_21	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0181628_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0181628_21	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0181628_21	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0181628_22	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0181628_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181628_24	PHROG	phrog_2550	NA	unknown function
UHGV-0181628_24	eggNOG-mapper	588581.Cpap_1271	NA	NA
UHGV-0181628_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181628_25	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0181628_25	eggNOG-mapper	324057.Pjdr2_1543	Phage capsid family	NA
UHGV-0181628_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181628_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181628_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0181628_26	KOfam	K06904	NA	NA
UHGV-0181628_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0181628_26	UniRef90	UniRef90_R5EAP6	Phage prohead protease HK97 family	NA
UHGV-0181628_26	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0181628_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0181628_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0181628_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0181628_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0181628_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181628_27	UniRef90	UniRef90_R5ENV9	Phage portal protein	NA
UHGV-0181628_27	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0181628_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181628_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0181628_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181628_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0181628_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181628_28	UniRef90	UniRef90_R5EM34	Phage terminase large subunit	NA
UHGV-0181628_28	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0181628_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181628_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181628_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181628_28	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0181628_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0181628_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA