UHGV-0181641

Genome information

Genome length 32,938 bps

CDS count 60

Completeness 92.71% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181641
vOTU ID	vOTU-073107
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580140_a1_ct63659_vs1@Siphoviridae__sp._ctVZM1
BioSample	SAMEA2580140
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.84
Jumbo phage	No

Genome content
Genome length	32,938 bps
GC content	42.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	87.72%
Average CDS length	490.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181641_1	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0181641_1	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0181641_1	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0181641_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0181641_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0181641_2	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0181641_2	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0181641_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0181641_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0181641_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0181641_2	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0181641_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0181641_3	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0181641_3	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0181641_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0181641_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0181641_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0181641_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0181641_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0181641_4	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-0181641_4	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0181641_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0181641_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0181641_4	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0181641_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0181641_5	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0181641_5	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0181641_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0181641_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0181641_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0181641_5	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0181641_7	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0181641_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0181641_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0181641_8	Structural annotation	PF05657	NA	NA
UHGV-0181641_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181641_9	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0181641_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0181641_9	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0181641_10	PHROG	phrog_88	major tail protein	tail
UHGV-0181641_10	UniRef90	UniRef90_UPI0006C1EB28	phage tail protein	NA
UHGV-0181641_10	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0181641_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0181641_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0181641_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0181641_12	UniRef90	UniRef90_UPI0006C3C180	phage tail tape measure protein	NA
UHGV-0181641_12	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0181641_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0181641_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0181641_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0181641_13	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0181641_13	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0181641_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0181641_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0181641_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181641_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0181641_14	PHROG	phrog_13289	tail protein	tail
UHGV-0181641_14	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-0181641_14	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0181641_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181641_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0181641_14	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0181641_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0181641_15	PHROG	phrog_14030	NA	unknown function
UHGV-0181641_15	UniRef90	UniRef90_A0A6N3GME3	Ricin-type beta-trefoil lectin domain protein	NA
UHGV-0181641_15	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0181641_15	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0181641_15	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0181641_16	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0181641_16	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0181641_17	eggNOG-mapper	1007096.BAGW01000036_gene2668	NA	NA
UHGV-0181641_19	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0181641_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0181641_19	UniRef90	UniRef90_A0A391PEE2	Phage integrase	NA
UHGV-0181641_19	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0181641_19	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0181641_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181641_19	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0181641_19	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0181641_21	PHROG	phrog_4105	NA	unknown function
UHGV-0181641_21	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0181641_22	PHROG	phrog_1129	holin	lysis
UHGV-0181641_22	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0181641_22	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0181641_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0181641_22	Structural annotation	PF16079	NA	NA
UHGV-0181641_23	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0181641_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0181641_24	PHROG	phrog_291	endolysin	lysis
UHGV-0181641_24	UniRef90	UniRef90_UPI0008D932EA	glycoside hydrolase family 25 protein	NA
UHGV-0181641_24	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0181641_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0181641_24	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0181641_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0181641_24	Structural annotation	PF01183, PF11623, COG3757, COG2139	NA	NA
UHGV-0181641_25	KOfam	K14059	int; integrase	NA
UHGV-0181641_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0181641_25	UniRef90	UniRef90_A0A4R3K6N9	Integrase	NA
UHGV-0181641_25	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0181641_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181641_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181641_25	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0181641_26	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0181641_26	PHROG	phrog_8036	NA	unknown function
UHGV-0181641_26	UniRef90	UniRef90_A0A414UZM1	DNA damage-inducible protein D	NA
UHGV-0181641_26	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0181641_26	AcrCatalog	cluster_17589	NA	NA
UHGV-0181641_26	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0181641_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181641_26	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0181641_26	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0181641_26	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0181641_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0181641_27	UniRef90	UniRef90_UPI000E486504	helix-turn-helix domain-containing protein	NA
UHGV-0181641_27	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181641_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181641_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0181641_29	UniRef90	UniRef90_A0A3E5GPF5	XRE family transcriptional regulator	NA
UHGV-0181641_29	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0181641_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181641_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181641_29	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181641_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0181641_33	UniRef90	UniRef90_A0A0U2WUA4	Phage-related protein	NA
UHGV-0181641_33	eggNOG-mapper	665956.HMPREF1032_03082	NA	NA
UHGV-0181641_34	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0181641_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181641_34	Structural annotation	PF13744, MF_00535, NF010465, COG3655	NA	NA
UHGV-0181641_42	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0181641_42	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0181641_42	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0181641_43	PHROG	phrog_7566	NA	unknown function
UHGV-0181641_43	UniRef90	UniRef90_A0A373MWE5	Phosphoenolpyruvate carboxykinase	NA
UHGV-0181641_43	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0181641_45	PHROG	phrog_15768	NA	unknown function
UHGV-0181641_45	UniRef90	UniRef90_UPI001C00EC79	NA	NA
UHGV-0181641_45	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0181641_45	AcrCatalog	cluster_14472	NA	NA
UHGV-0181641_45	Pfam	PF19808	NA	DUF6291
UHGV-0181641_45	Structural annotation	PF19808	NA	NA
UHGV-0181641_46	PHROG	phrog_15077	NA	unknown function
UHGV-0181641_46	eggNOG-mapper	1235800.C819_02581	NA	NA
UHGV-0181641_48	eggNOG-mapper	411461.DORFOR_00012	NA	NA
UHGV-0181641_49	PHROG	phrog_26445	NA	unknown function
UHGV-0181641_49	UniRef90	UniRef90_A0A412MF67	DNA-binding response regulator	NA
UHGV-0181641_49	eggNOG-mapper	97139.C824_00034	NA	NA
UHGV-0181641_49	Structural annotation	PF00196	NA	NA
UHGV-0181641_50	PHROG	phrog_20593	NA	unknown function
UHGV-0181641_52	eggNOG-mapper	568816.Acin_1246	NA	NA
UHGV-0181641_53	UniRef90	UniRef90_A0A3R6NW84	NA	NA
UHGV-0181641_53	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0181641_53	Pfam	PF04448	NA	DUF551
UHGV-0181641_53	Structural annotation	NF041588	NA	NA
UHGV-0181641_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181641_57	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0181641_57	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0181641_57	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181641_57	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0181641_58	UniRef90	UniRef90_A0A8I0AQA2	Helix-turn-helix transcriptional regulator	NA
UHGV-0181641_58	eggNOG-mapper	1007096.BAGW01000035_gene1350	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0181641_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181641_58	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0181641_60	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0181641_60	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181641_60	UniRef90	UniRef90_A0A1Q6K9L9	HNHc domain-containing protein	NA
UHGV-0181641_60	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0181641_60	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0181641_60	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA