UHGV-0181723

Genome information

Genome length 38,871 bps

CDS count 65

Completeness 82.43% (medium-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181723
vOTU ID	vOTU-029254
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594651
BioSample	SAMN09781783
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.14
Jumbo phage	No

Genome content
Genome length	38,871 bps
GC content	45.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.63%
Average CDS length	556.99 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181723_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181723_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0181723_1	UniRef90	UniRef90_A0A7C6ISV8	Recombinase family protein	NA
UHGV-0181723_1	eggNOG-mapper	755731.Clo1100_0519	Resolvase, N terminal domain	NA
UHGV-0181723_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181723_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0181723_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0181723_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181723_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0181723_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0181723_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0181723_3	UniRef90	UniRef90_A0A1Y4HYP5	Repressor LexA	NA
UHGV-0181723_3	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0181723_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0181723_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0181723_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0181723_4	UniRef90	UniRef90_A0A1Y4SQ86	NA	NA
UHGV-0181723_4	eggNOG-mapper	482234.SCAZ3_03540	NA	NA
UHGV-0181723_4	Pfam	PF05339	NA	DUF739
UHGV-0181723_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0181723_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0181723_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0181723_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181723_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0181723_16	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-0181723_16	Structural annotation	PF21578	NA	NA
UHGV-0181723_18	PHROG	phrog_7566	NA	unknown function
UHGV-0181723_18	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0181723_18	eggNOG-mapper	1410650.JHWL01000003_gene2846	NA	NA
UHGV-0181723_21	PHROG	phrog_474	phosphofructokinase	other
UHGV-0181723_21	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-0181723_21	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0181723_21	Pfam	PF19905	NA	DUF6378
UHGV-0181723_24	PHROG	phrog_3777	NA	unknown function
UHGV-0181723_24	UniRef90	UniRef90_UPI001F395EE7	NA	NA
UHGV-0181723_24	eggNOG-mapper	1235835.C814_02358	NA	NA
UHGV-0181723_24	Pfam	PF12957	NA	DUF3846
UHGV-0181723_24	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0181723_24	Structural annotation	PF12957	NA	NA
UHGV-0181723_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0181723_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0181723_25	UniRef90	UniRef90_A0A1W1VQW5	Single-stranded DNA-binding protein	NA
UHGV-0181723_25	eggNOG-mapper	1121422.AUMW01000016_gene2032	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0181723_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181723_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0181723_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181723_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0181723_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0181723_26	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0181723_26	eggNOG-mapper	1449335.JQLG01000004_gene2309	Nucleotide pyrophosphohydrolase	NA
UHGV-0181723_26	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0181723_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181723_27	UniRef90	UniRef90_UPI000492AC93	NA	NA
UHGV-0181723_27	eggNOG-mapper	469618.FVAG_00790	NA	NA
UHGV-0181723_27	Pfam	PF07374	NA	DUF1492
UHGV-0181723_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181723_27	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0181723_28	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0181723_28	UniRef90	UniRef90_A0A7G9WG99	Serine/arginine repetitive matrix protein 2	NA
UHGV-0181723_28	eggNOG-mapper	1291050.JAGE01000002_gene3387	NA	NA
UHGV-0181723_28	Structural annotation	PF06763	NA	NA
UHGV-0181723_29	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0181723_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0181723_29	UniRef90	UniRef90_UPI0018AA8476	protoporphyrinogen oxidase	NA
UHGV-0181723_29	eggNOG-mapper	537007.BLAHAN_04229	NA	NA
UHGV-0181723_29	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0181723_29	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0181723_30	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0181723_30	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0181723_30	UniRef90	UniRef90_A0A1M6WE20	Helix-turn-helix	NA
UHGV-0181723_30	eggNOG-mapper	1105031.HMPREF1141_3365	Helix-turn-helix domain	NA
UHGV-0181723_30	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0181723_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181723_30	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0181723_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0181723_31	PHROG	phrog_2523	NA	unknown function
UHGV-0181723_31	UniRef90	UniRef90_A0A1M6WDL9	Phage-related protein	NA
UHGV-0181723_31	eggNOG-mapper	2754.EH55_00510	NA	NA
UHGV-0181723_31	Pfam	PF05973	NA	Gp49
UHGV-0181723_31	COG	COG4679	Phage-related protein	NA
UHGV-0181723_31	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0181723_32	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0181723_32	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0181723_32	UniRef90	UniRef90_A0A1C5UD60	Addiction module toxin, RelE/StbE family	NA
UHGV-0181723_32	eggNOG-mapper	718252.FP2_32290	addiction module toxin, RelE StbE family	NA
UHGV-0181723_32	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0181723_32	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0181723_32	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0181723_32	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0181723_33	PHROG	phrog_4085	NA	unknown function
UHGV-0181723_33	UniRef90	UniRef90_J5XAV3	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0181723_33	eggNOG-mapper	679192.HMPREF9013_0987	NA	NA
UHGV-0181723_33	Pfam	PF19807	NA	DUF6290
UHGV-0181723_34	UniRef90	UniRef90_A0A133NHJ0	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	NA
UHGV-0181723_34	eggNOG-mapper	1395587.P364_0115835	NA	NA
UHGV-0181723_34	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0181723_35	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0181723_35	UniRef90	UniRef90_A0A6N7VR38	ORF6N domain-containing protein	NA
UHGV-0181723_35	eggNOG-mapper	525255.HMPREF0077_0386	ORF6N domain	NA
UHGV-0181723_35	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0181723_36	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0181723_36	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0181723_36	UniRef90	UniRef90_A0A1C6JHE4	Bacteriophage tail assembly protein	NA
UHGV-0181723_36	eggNOG-mapper	1519439.JPJG01000059_gene1919	Phage terminase large subunit (GpA)	NA
UHGV-0181723_36	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0181723_36	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0181723_36	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0181723_36	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0181723_36	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0181723_37	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0181723_37	eggNOG-mapper	1408437.JNJN01000030_gene1067	NA	NA
UHGV-0181723_37	Pfam	PF19645	NA	DUF6148
UHGV-0181723_37	Structural annotation	PF19645	NA	NA
UHGV-0181723_38	PHROG	phrog_21	portal protein	head and packaging
UHGV-0181723_38	UniRef90	UniRef90_A0A1C6JI70	Phage portal protein, lambda family	NA
UHGV-0181723_38	eggNOG-mapper	1519439.JPJG01000059_gene1921	Phage portal protein, lambda family	NA
UHGV-0181723_38	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0181723_38	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0181723_38	COG	COG5511	Phage capsid protein	NA
UHGV-0181723_38	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0181723_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0181723_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0181723_39	UniRef90	UniRef90_K5ACX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0181723_39	eggNOG-mapper	445972.ANACOL_03360	Belongs to the peptidase S14 family	NA
UHGV-0181723_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0181723_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0181723_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0181723_40	UniRef90	UniRef90_UPI001C3EAC1A	head decoration protein	NA
UHGV-0181723_40	eggNOG-mapper	445972.ANACOL_03361	NA	NA
UHGV-0181723_40	Structural annotation	PF02924	NA	NA
UHGV-0181723_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-0181723_41	UniRef90	UniRef90_A0A1C6JH61	Phage major capsid protein E	NA
UHGV-0181723_41	eggNOG-mapper	1203606.HMPREF1526_01904	Phage major capsid protein E	NA
UHGV-0181723_41	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0181723_41	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0181723_42	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0181723_42	UniRef90	UniRef90_A0A174T5V8	Transposase	NA
UHGV-0181723_42	eggNOG-mapper	445972.ANACOL_03363	NA	NA
UHGV-0181723_42	Structural annotation	PF07498	NA	NA
UHGV-0181723_43	PHROG	phrog_2551	minor tail protein	tail
UHGV-0181723_43	UniRef90	UniRef90_UPI00189C9AD8	sugar ABC transporter ATP-binding protein	NA
UHGV-0181723_43	eggNOG-mapper	445972.ANACOL_03364	NA	NA
UHGV-0181723_43	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0181723_44	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0181723_44	eggNOG-mapper	1203606.HMPREF1526_01908	NA	NA
UHGV-0181723_44	Structural annotation	PF08873	NA	NA
UHGV-0181723_45	KOfam	K06907	NA	NA
UHGV-0181723_45	PHROG	phrog_23	tail sheath	tail
UHGV-0181723_45	UniRef90	UniRef90_A0A1C6JH68	Phage tail sheath protein	NA
UHGV-0181723_45	eggNOG-mapper	1519439.JPJG01000059_gene1928	COG3497 Phage tail sheath protein FI	NA
UHGV-0181723_45	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0181723_45	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0181723_46	KOfam	K06908	NA	NA
UHGV-0181723_46	PHROG	phrog_55	head closure	connector
UHGV-0181723_46	UniRef90	UniRef90_A0A1C6JGP5	Phage tail tube protein FII	NA
UHGV-0181723_46	eggNOG-mapper	1514668.JOOA01000001_gene199	Phage tail tube protein FII	NA
UHGV-0181723_46	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0181723_46	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0181723_47	UniRef90	UniRef90_A0A7G9WG89	Early nodulin 20 (N-20)	NA
UHGV-0181723_47	eggNOG-mapper	537007.BLAHAN_04243	NA	NA
UHGV-0181723_47	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0181723_49	PHROG	phrog_23464	NA	unknown function
UHGV-0181723_49	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0181723_49	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-0181723_49	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0181723_49	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0181723_50	PHROG	phrog_46	tail protein	tail
UHGV-0181723_50	UniRef90	UniRef90_A0A7G9WG87	LysM domain-containing protein	NA
UHGV-0181723_50	eggNOG-mapper	1514668.JOOA01000001_gene196	Phage Tail Protein X	NA
UHGV-0181723_50	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0181723_51	KOfam	K06905	NA	NA
UHGV-0181723_51	PHROG	phrog_52	tail protein	tail
UHGV-0181723_51	UniRef90	UniRef90_A0A6N3FCG5	Phage late control gene D protein (GPD)	NA
UHGV-0181723_51	eggNOG-mapper	445972.ANACOL_03371	COG3500 Phage protein D	NA
UHGV-0181723_51	COG	COG3500	NA	NA
UHGV-0181723_51	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0181723_53	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0181723_53	PHROG	phrog_11037	NA	unknown function
UHGV-0181723_53	eggNOG-mapper	711393.AYRX01000010_gene2537	peptidase	NA
UHGV-0181723_53	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0181723_53	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0181723_53	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0181723_54	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0181723_54	eggNOG-mapper	445972.ANACOL_03373	P2 GpU family protein	NA
UHGV-0181723_54	COG	COG3499	NA	NA
UHGV-0181723_54	Structural annotation	PF06995, TIGR02126, COG3499	NA	NA
UHGV-0181723_55	PHROG	phrog_15729	baseplate protein	tail
UHGV-0181723_55	UniRef90	UniRef90_A0A174T7Q2	Early E1A protein	NA
UHGV-0181723_55	eggNOG-mapper	1519439.JPJG01000059_gene1936	NA	NA
UHGV-0181723_55	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0181723_56	PHROG	phrog_6	baseplate protein	tail
UHGV-0181723_56	UniRef90	UniRef90_A0A6N3FBS6	Baseplate J-like protein	NA
UHGV-0181723_56	eggNOG-mapper	445972.ANACOL_03375	Baseplate J-like protein	NA
UHGV-0181723_56	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0181723_56	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0181723_56	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0181723_57	PHROG	phrog_14404	baseplate protein	tail
UHGV-0181723_57	UniRef90	UniRef90_A0A1C6JGJ9	Bacteriophage P2-related tail formation protein	NA
UHGV-0181723_57	eggNOG-mapper	1519439.JPJG01000059_gene1938	Phage tail protein (Tail_P2_I)	NA
UHGV-0181723_57	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0181723_57	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0181723_57	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0181723_57	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0181723_58	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0181723_58	UniRef90	UniRef90_A0A7W0DDT2	Phage tail protein	NA
UHGV-0181723_58	eggNOG-mapper	552398.HMPREF0866_01596	tail collar domain protein	NA
UHGV-0181723_58	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0181723_61	PHROG	phrog_1382	NA	unknown function
UHGV-0181723_61	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0181723_61	Structural annotation	NF040910	NA	NA
UHGV-0181723_62	eggNOG-mapper	428125.CLOLEP_01430	NA	NA
UHGV-0181723_62	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0181723_63	PHROG	phrog_4105	NA	unknown function
UHGV-0181723_64	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0181723_64	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0181723_64	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0181723_64	COG	COG5546	NA	NA
UHGV-0181723_65	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181723_65	PHROG	phrog_4018	amidase	lysis
UHGV-0181723_65	UniRef90	UniRef90_UPI001373CFBA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181723_65	eggNOG-mapper	888727.HMPREF9092_0301	repeat protein	NA
UHGV-0181723_65	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0181723_65	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0181723_65	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA