UHGV-0181736

Genome information

Genome length 29,904 bps

CDS count 46

Completeness 75.07% (medium-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181736
vOTU ID	vOTU-029255
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595443
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.86
Jumbo phage	No

Genome content
Genome length	29,904 bps
GC content	53.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.76%
Average CDS length	601.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181736_1	PHROG	phrog_3754	NA	unknown function
UHGV-0181736_1	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0181736_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0181736_3	PHROG	phrog_435	endolysin	lysis
UHGV-0181736_3	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181736_3	eggNOG-mapper	697281.Mahau_0053	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0181736_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0181736_3	Pfam	PF05036	SPOR domain	SPOR
UHGV-0181736_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181736_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0181736_4	PHROG	phrog_881	holin	lysis
UHGV-0181736_4	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-0181736_4	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0181736_4	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0181736_4	Structural annotation	PF16938	NA	NA
UHGV-0181736_5	PHROG	phrog_1863	NA	unknown function
UHGV-0181736_5	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0181736_6	PHROG	phrog_372	tail protein	tail
UHGV-0181736_6	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0181736_6	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0181736_6	Pfam	PF05895	NA	DUF859
UHGV-0181736_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0181736_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0181736_7	PHROG	phrog_3558	tail protein	tail
UHGV-0181736_7	UniRef90	UniRef90_A0A810Q1Y2	Prophage_tail domain-containing protein	NA
UHGV-0181736_7	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-0181736_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0181736_7	COG	COG4926	Phage-related protein	NA
UHGV-0181736_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0181736_8	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-0181736_8	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0181736_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0181736_8	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0181736_9	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0181736_9	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0181736_9	COG	COG1511	NA	NA
UHGV-0181736_9	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0181736_10	PHROG	phrog_7115	NA	unknown function
UHGV-0181736_10	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0181736_10	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0181736_10	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0181736_10	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0181736_13	PHROG	phrog_885	major tail protein	tail
UHGV-0181736_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0181736_13	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0181736_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0181736_14	PHROG	phrog_17405	head protein	head and packaging
UHGV-0181736_14	Structural annotation	PF11367	NA	NA
UHGV-0181736_15	PHROG	phrog_17977	NA	unknown function
UHGV-0181736_15	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0181736_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0181736_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-0181736_17	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0181736_17	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0181736_17	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0181736_18	Structural annotation	PF06810	NA	NA
UHGV-0181736_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0181736_19	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0181736_19	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0181736_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0181736_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0181736_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0181736_21	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0181736_21	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0181736_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0181736_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0181736_21	COG	COG2369	NA	NA
UHGV-0181736_21	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0181736_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0181736_22	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0181736_22	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0181736_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181736_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0181736_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181736_23	PHROG	phrog_10250	NA	unknown function
UHGV-0181736_23	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0181736_23	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0181736_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0181736_23	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0181736_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181736_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181736_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0181736_25	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0181736_25	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0181736_25	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0181736_25	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0181736_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0181736_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181736_25	COG	COG0863	DNA modification methylase	NA
UHGV-0181736_25	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0181736_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0181736_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0181736_26	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0181736_26	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0181736_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0181736_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0181736_26	COG	COG0863	DNA modification methylase	NA
UHGV-0181736_27	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0181736_27	Structural annotation	TIGR01636	NA	NA
UHGV-0181736_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0181736_33	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0181736_33	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0181736_33	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0181736_33	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0181736_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0181736_33	COG	COG0863	DNA modification methylase	NA
UHGV-0181736_33	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0181736_34	PHROG	phrog_22529	NA	unknown function
UHGV-0181736_34	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0181736_34	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0181736_34	Pfam	PF06725	3D domain	3D
UHGV-0181736_34	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0181736_34	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0181736_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181736_35	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0181736_35	eggNOG-mapper	1121864.OMO_01105	IrrE N-terminal-like domain	NA
UHGV-0181736_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181736_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181736_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181736_37	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181736_37	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0181736_37	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0181736_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181736_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181736_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0181736_39	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0181736_39	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181736_39	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0181736_39	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0181736_39	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181736_39	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181736_39	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0181736_40	PHROG	phrog_22529	NA	unknown function
UHGV-0181736_40	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0181736_40	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0181736_40	Pfam	PF06725	3D domain	3D
UHGV-0181736_40	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0181736_40	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0181736_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0181736_42	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0181736_42	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0181736_42	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0181736_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0181736_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0181736_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0181736_44	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0181736_44	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-0181736_44	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0181736_44	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0181736_44	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0181736_45	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0181736_46	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0181736_46	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181736_46	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0181736_46	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0181736_46	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0181736_46	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0181736_46	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA