UHGV-0181737

Genome information

Genome length 30,687 bps

CDS count 51

Completeness 72.54% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181737
vOTU ID	vOTU-029256
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595440
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.54% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.05
Jumbo phage	No

Genome content
Genome length	30,687 bps
GC content	52.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	85.00%
Average CDS length	515.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181737_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181737_2	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0181737_2	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0181737_2	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0181737_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181737_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0181737_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181737_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181737_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181737_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181737_3	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0181737_3	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0181737_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181737_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181737_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181737_4	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0181737_4	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0181737_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181737_4	COG	COG2369	NA	NA
UHGV-0181737_4	Structural annotation	PF06152	NA	NA
UHGV-0181737_5	Structural annotation	PF07258, MF_01194, TIGR02097	NA	NA
UHGV-0181737_6	Structural annotation	PF18152	NA	NA
UHGV-0181737_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181737_7	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0181737_7	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0181737_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181737_7	Structural annotation	PF06810	NA	NA
UHGV-0181737_8	PHROG	phrog_212	major head protein	head and packaging
UHGV-0181737_8	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0181737_8	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0181737_8	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0181737_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0181737_9	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0181737_10	PHROG	phrog_3366	NA	unknown function
UHGV-0181737_10	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0181737_10	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0181737_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0181737_11	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0181737_11	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0181737_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0181737_11	Structural annotation	PF11114	NA	NA
UHGV-0181737_12	PHROG	phrog_3266	tail completion	connector
UHGV-0181737_12	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0181737_12	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0181737_12	Structural annotation	PF12691	NA	NA
UHGV-0181737_13	PHROG	phrog_3099	NA	unknown function
UHGV-0181737_13	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0181737_13	Structural annotation	TIGR02126	NA	NA
UHGV-0181737_14	PHROG	phrog_11299	NA	unknown function
UHGV-0181737_14	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0181737_14	Structural annotation	PF10666	NA	NA
UHGV-0181737_15	PHROG	phrog_706	NA	unknown function
UHGV-0181737_15	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0181737_15	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0181737_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0181737_15	Structural annotation	PF06854	NA	NA
UHGV-0181737_16	PHROG	phrog_806	NA	unknown function
UHGV-0181737_16	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0181737_16	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0181737_16	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0181737_16	Pfam	PF11611	NA	DUF4352
UHGV-0181737_16	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0181737_17	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0181737_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181737_17	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0181737_17	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0181737_17	COG	COG1511	NA	NA
UHGV-0181737_17	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0181737_18	PHROG	phrog_1194	NA	unknown function
UHGV-0181737_18	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0181737_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0181737_19	PHROG	phrog_13879	NA	unknown function
UHGV-0181737_19	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0181737_19	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0181737_21	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0181737_21	PHROG	phrog_11157	NA	unknown function
UHGV-0181737_21	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0181737_21	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0181737_21	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0181737_21	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0181737_21	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0181737_21	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0181737_22	PHROG	phrog_18725	NA	unknown function
UHGV-0181737_22	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0181737_22	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0181737_31	PHROG	phrog_2310	NA	unknown function
UHGV-0181737_31	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0181737_33	PHROG	phrog_1863	NA	unknown function
UHGV-0181737_33	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0181737_34	PHROG	phrog_881	holin	lysis
UHGV-0181737_34	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0181737_34	eggNOG-mapper	326426.Bbr_0318	Putative phage holin Dp-1	NA
UHGV-0181737_34	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0181737_34	Structural annotation	PF16938	NA	NA
UHGV-0181737_35	PHROG	phrog_435	endolysin	lysis
UHGV-0181737_35	UniRef90	UniRef90_A0A8D9PDX2	MurNAc-LAA protein	NA
UHGV-0181737_35	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181737_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0181737_35	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0181737_37	PHROG	phrog_3754	NA	unknown function
UHGV-0181737_37	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0181737_38	PHROG	phrog_21718	NA	unknown function
UHGV-0181737_38	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0181737_39	PHROG	phrog_22984	NA	unknown function
UHGV-0181737_40	PHROG	phrog_16490	NA	unknown function
UHGV-0181737_40	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0181737_41	PHROG	phrog_20016	NA	unknown function
UHGV-0181737_41	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0181737_41	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0181737_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181737_42	PHROG	phrog_28802	NA	unknown function
UHGV-0181737_42	Structural annotation	PF12510	NA	NA
UHGV-0181737_43	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0181737_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0181737_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0181737_44	UniRef90	UniRef90_UPI0003130B23	recombinase family protein	NA
UHGV-0181737_44	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0181737_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0181737_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0181737_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0181737_44	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0181737_45	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0181737_46	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0181737_46	PHROG	phrog_19856	NA	unknown function
UHGV-0181737_46	UniRef90	UniRef90_A0A2Z4Q9W7	Restriction endonuclease	NA
UHGV-0181737_46	eggNOG-mapper	397290.C810_01426	Restriction endonuclease	NA
UHGV-0181737_46	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0181737_46	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0181737_46	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0181737_46	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0181737_46	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-0181737_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181737_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181737_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181737_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0181737_49	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0181737_49	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0181737_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181737_49	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0181737_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA