UHGV-0181763

Genome information

Genome length 55,958 bps

CDS count 94

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181763
vOTU ID	vOTU-046727
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596311
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.28
Jumbo phage	No

Genome content
Genome length	55,958 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	87.88%
Average CDS length	526.79 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181763_1	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0181763_4	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181763_4	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-0181763_4	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-0181763_4	Pfam	PF03837	RecT family	RecT
UHGV-0181763_4	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0181763_5	KOfam	K06940	NA	NA
UHGV-0181763_5	PHROG	phrog_32498	NA	unknown function
UHGV-0181763_5	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0181763_5	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0181763_5	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0181763_6	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0181763_6	UniRef90	UniRef90_A0A358PQK7	Radical SAM protein	NA
UHGV-0181763_6	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0181763_6	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0181763_6	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0181763_7	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0181763_7	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0181763_7	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0181763_7	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0181763_7	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0181763_7	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0181763_7	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0181763_8	eggNOG-mapper	536232.CLM_1636	NA	NA
UHGV-0181763_8	Structural annotation	PF17457	NA	NA
UHGV-0181763_10	PHROG	phrog_19106	NA	unknown function
UHGV-0181763_10	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0181763_10	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0181763_10	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0181763_10	Structural annotation	TIGR01453	NA	NA
UHGV-0181763_11	PHROG	phrog_11769	NA	unknown function
UHGV-0181763_11	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0181763_11	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0181763_11	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0181763_11	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0181763_11	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0181763_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0181763_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0181763_12	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0181763_12	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0181763_12	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0181763_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0181763_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0181763_12	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0181763_15	PHROG	phrog_21026	NA	unknown function
UHGV-0181763_19	PHROG	phrog_8684	NA	unknown function
UHGV-0181763_19	UniRef90	UniRef90_F3AAR8	YopX domain-containing protein	NA
UHGV-0181763_19	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0181763_19	Pfam	PF09643	YopX protein	YopX
UHGV-0181763_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0181763_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0181763_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0181763_21	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0181763_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0181763_21	Structural annotation	PF14354, TIGR03655, TIGR02501	NA	NA
UHGV-0181763_22	PHROG	phrog_874	NA	unknown function
UHGV-0181763_22	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0181763_22	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0181763_24	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0181763_24	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-0181763_24	eggNOG-mapper	1141106.CAIB01000118_gene949	methyltransferase	NA
UHGV-0181763_24	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0181763_24	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0181763_24	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0181763_24	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0181763_25	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0181763_27	KOfam	K00953	FLAD1; FAD synthetase [EC:2.7.7.2]	NA
UHGV-0181763_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181763_27	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0181763_27	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0181763_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181763_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181763_27	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0181763_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0181763_28	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0181763_28	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0181763_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0181763_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0181763_28	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0181763_29	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0181763_29	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0181763_29	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0181763_30	KOfam	K14059	int; integrase	NA
UHGV-0181763_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0181763_30	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0181763_30	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0181763_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181763_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181763_30	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0181763_32	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0181763_33	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0181763_34	PHROG	phrog_16490	NA	unknown function
UHGV-0181763_34	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0181763_35	PHROG	phrog_20016	NA	unknown function
UHGV-0181763_35	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0181763_35	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0181763_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0181763_36	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0181763_37	PHROG	phrog_1233	NA	unknown function
UHGV-0181763_37	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0181763_40	UniRef90	UniRef90_A0A7X5I8Q7	Fork-head domain-containing protein	NA
UHGV-0181763_41	eggNOG-mapper	397290.C810_01348	NA	NA
UHGV-0181763_46	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0181763_47	Structural annotation	PF04606	NA	NA
UHGV-0181763_49	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0181763_49	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0181763_49	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0181763_49	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0181763_49	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0181763_49	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0181763_51	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0181763_52	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0181763_56	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0181763_56	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0181763_56	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0181763_57	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0181763_57	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0181763_57	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0181763_57	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0181763_57	COG	COG5410	NA	NA
UHGV-0181763_57	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0181763_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0181763_58	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0181763_58	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0181763_58	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0181763_58	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0181763_59	PHROG	phrog_64	portal protein	head and packaging
UHGV-0181763_59	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0181763_59	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0181763_59	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0181763_59	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0181763_60	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0181763_61	PHROG	phrog_909	major head protein	head and packaging
UHGV-0181763_61	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0181763_62	PHROG	phrog_29	major head protein	head and packaging
UHGV-0181763_62	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0181763_62	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0181763_62	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0181763_62	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0181763_63	Structural annotation	PF21169	NA	NA
UHGV-0181763_64	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0181763_65	PHROG	phrog_4105	NA	unknown function
UHGV-0181763_65	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0181763_66	PHROG	phrog_443	holin	lysis
UHGV-0181763_66	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0181763_66	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0181763_66	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0181763_66	Structural annotation	PF16945	NA	NA
UHGV-0181763_67	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0181763_68	PHROG	phrog_1233	NA	unknown function
UHGV-0181763_68	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0181763_68	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0181763_69	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0181763_69	AcrCatalog	cluster_24841	NA	NA
UHGV-0181763_70	Structural annotation	PF05657	NA	NA
UHGV-0181763_71	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0181763_71	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0181763_74	PHROG	phrog_14030	NA	unknown function
UHGV-0181763_74	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0181763_74	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0181763_74	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0181763_75	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0181763_75	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0181763_75	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0181763_76	PHROG	phrog_9700	NA	unknown function
UHGV-0181763_76	eggNOG-mapper	626418.bglu_1g20650	NA	NA
UHGV-0181763_76	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0181763_76	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0181763_77	PHROG	phrog_1194	NA	unknown function
UHGV-0181763_77	Pfam	PF20458	NA	DUF6711
UHGV-0181763_77	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0181763_78	PHROG	phrog_18190	NA	unknown function
UHGV-0181763_78	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0181763_78	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0181763_78	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0181763_78	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0181763_79	PHROG	phrog_17196	kinase	other
UHGV-0181763_79	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0181763_79	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0181763_80	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0181763_81	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-0181763_82	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0181763_82	Structural annotation	NF040910	NA	NA
UHGV-0181763_84	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0181763_84	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0181763_84	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0181763_84	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181763_84	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0181763_84	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0181763_85	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181763_85	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0181763_85	eggNOG-mapper	469609.HMPREF0847_00376	DNA-binding helix-turn-helix protein	NA
UHGV-0181763_85	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0181763_85	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181763_85	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0181763_85	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0181763_86	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0181763_86	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0181763_86	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0181763_86	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-0181763_86	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0181763_86	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0181763_86	COG	COG3617	Prophage antirepressor	NA
UHGV-0181763_86	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0181763_88	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0181763_88	PHROG	phrog_19890	NA	unknown function
UHGV-0181763_88	UniRef90	UniRef90_A0A396AHW9	SLT domain-containing protein	NA
UHGV-0181763_88	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-0181763_88	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0181763_88	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0181763_88	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0181763_90	PHROG	phrog_26861	NA	unknown function
UHGV-0181763_90	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0181763_90	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0181763_90	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0181763_90	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0181763_90	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0181763_92	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0181763_92	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0181763_92	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0181763_92	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0181763_92	Pfam	PF13476	AAA domain	AAA_23
UHGV-0181763_92	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0181763_92	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA