UHGV-0181965

Genome information

Genome length 21,824 bps

CDS count 41

Completeness 55.11% (medium-quality)

geNomad score 0.9193

Prediction confidence Confident

Genome information
Genome ID	UHGV-0181965
vOTU ID	vOTU-029273
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595121
BioSample	SAMN09781756
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9193
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.5
Jumbo phage	No

Genome content
Genome length	21,824 bps
GC content	27.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.03%
Average CDS length	496.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0181965_3	PHROG	phrog_422	major head protein	head and packaging
UHGV-0181965_3	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0181965_3	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0181965_3	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0181965_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0181965_4	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0181965_4	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-0181965_4	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0181965_4	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0181965_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0181965_6	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0181965_6	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0181965_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0181965_6	COG	COG2369	NA	NA
UHGV-0181965_6	Structural annotation	PF06152	NA	NA
UHGV-0181965_7	PHROG	phrog_533	portal protein	head and packaging
UHGV-0181965_7	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0181965_7	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0181965_7	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0181965_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0181965_8	PHROG	phrog_10250	NA	unknown function
UHGV-0181965_8	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0181965_8	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0181965_8	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0181965_8	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0181965_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0181965_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0181965_8	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0181965_9	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0181965_9	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-0181965_9	eggNOG-mapper	1567014.A0A0A7RTX1_9VIRU	NA	NA
UHGV-0181965_9	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0181965_9	Structural annotation	PF07141	NA	NA
UHGV-0181965_11	Structural annotation	PF15456	NA	NA
UHGV-0181965_13	PHROG	phrog_7488	NA	unknown function
UHGV-0181965_16	PHROG	phrog_625	NA	unknown function
UHGV-0181965_16	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-0181965_16	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0181965_16	Structural annotation	PF12961	NA	NA
UHGV-0181965_18	eggNOG-mapper	1123263.AUKY01000096_gene1822	C-5 cytosine-specific DNA methylase	NA
UHGV-0181965_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0181965_26	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0181965_26	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0181965_28	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0181965_28	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0181965_28	UniRef90	UniRef90_A0A353JB44	Lactamase_B domain-containing protein	NA
UHGV-0181965_28	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0181965_28	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0181965_28	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0181965_28	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0181965_29	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0181965_29	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0181965_29	UniRef90	UniRef90_R6E1Z6	Recombinase phage RecT family	NA
UHGV-0181965_29	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0181965_29	Pfam	PF03837	RecT family	RecT
UHGV-0181965_29	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0181965_29	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0181965_29	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0181965_30	PHROG	phrog_674	NA	unknown function
UHGV-0181965_30	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0181965_30	Pfam	PF07083	NA	DUF1351
UHGV-0181965_30	Structural annotation	PF07083	NA	NA
UHGV-0181965_32	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0181965_32	UniRef90	UniRef90_UPI00123C5B2A	DNA replication protein	NA
UHGV-0181965_32	eggNOG-mapper	762550.LEGAS_1609	DnaD domain protein	NA
UHGV-0181965_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0181965_32	Structural annotation	PF06926	NA	NA
UHGV-0181965_34	PHROG	phrog_989	NA	unknown function
UHGV-0181965_34	UniRef90	UniRef90_A0A413T975	Mga domain-containing protein	NA
UHGV-0181965_34	eggNOG-mapper	469596.HMPREF9488_01471	NA	NA
UHGV-0181965_37	UniRef90	UniRef90_UPI0008A1B4D1	NA	NA
UHGV-0181965_37	eggNOG-mapper	1121947.AUHK01000002_gene903	NA	NA
UHGV-0181965_37	Pfam	PF05339	NA	DUF739
UHGV-0181965_37	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0181965_37	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0181965_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0181965_38	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0181965_38	UniRef90	UniRef90_A0A7G9WF64	Transcriptional regulator	NA
UHGV-0181965_38	eggNOG-mapper	910314.HMPREF9220_1115	Peptidase S24-like	NA
UHGV-0181965_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0181965_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0181965_38	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0181965_39	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0181965_39	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0181965_39	eggNOG-mapper	1211819.CALK01000004_gene2171	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0181965_39	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0181965_39	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0181965_40	KOfam	K14059	int; integrase	NA
UHGV-0181965_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0181965_40	UniRef90	UniRef90_R5A639	Tyr recombinase domain-containing protein	NA
UHGV-0181965_40	eggNOG-mapper	1159488.SEQMU2_04540	Phage integrase family	NA
UHGV-0181965_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0181965_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0181965_40	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA