UHGV-0182024

Genome information

Genome length 43,444 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182024
vOTU ID	vOTU-004409
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596191
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.44
Jumbo phage	No

Genome content
Genome length	43,444 bps
GC content	56.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.70%
Average CDS length	644.86 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182024_2	PHROG	phrog_156	portal protein	head and packaging
UHGV-0182024_2	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0182024_2	Structural annotation	PF12236, MF_04120, TIGR01542, COG5518	NA	NA
UHGV-0182024_3	PHROG	phrog_371	major head protein	head and packaging
UHGV-0182024_3	UniRef90	UniRef90_A0A1Y4TDW7	Mu-like_gpT domain-containing protein	NA
UHGV-0182024_3	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0182024_3	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0182024_3	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182024_4	PHROG	phrog_24113	NA	unknown function
UHGV-0182024_4	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0182024_4	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0182024_5	PHROG	phrog_35275	NA	unknown function
UHGV-0182024_5	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0182024_8	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0182024_8	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0182024_8	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0182024_9	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0182024_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0182024_9	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0182024_9	eggNOG-mapper	316274.Haur_1384	NA	NA
UHGV-0182024_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0182024_9	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0182024_9	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0182024_11	Structural annotation	PF03869	NA	NA
UHGV-0182024_12	PHROG	phrog_34979	NA	unknown function
UHGV-0182024_12	UniRef90	UniRef90_A0A1Y3RPR4	ArdcN domain-containing protein	NA
UHGV-0182024_12	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0182024_12	Structural annotation	PF08401	NA	NA
UHGV-0182024_15	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0182024_15	UniRef90	UniRef90_A0A1V5KAU2	DarA_C domain-containing protein	NA
UHGV-0182024_15	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0182024_15	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0182024_17	UniRef90	UniRef90_W1I3U4	Uncultured bacterium extrachromosomal DNA RGI00970	NA
UHGV-0182024_18	eggNOG-mapper	1236976.JCM16418_5054	NA	NA
UHGV-0182024_21	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0182024_21	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0182024_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0182024_22	Pfam	PF07374	NA	DUF1492
UHGV-0182024_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0182024_22	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0182024_24	PHROG	phrog_18716	NA	unknown function
UHGV-0182024_24	UniRef90	UniRef90_UPI001D16BB7C	NA	NA
UHGV-0182024_24	eggNOG-mapper	1029718.SFBM_0379	NA	NA
UHGV-0182024_24	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0182024_24	Structural annotation	PF18909	NA	NA
UHGV-0182024_25	PHROG	phrog_3136	NA	unknown function
UHGV-0182024_25	UniRef90	UniRef90_UPI001A9A8D4F	ASCH domain-containing protein	NA
UHGV-0182024_25	eggNOG-mapper	693746.OBV_25380	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0182024_25	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0182024_25	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0182024_26	PHROG	phrog_2164	NA	unknown function
UHGV-0182024_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0182024_28	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0182024_28	UniRef90	UniRef90_UPI0009406B47	endodeoxyribonuclease	NA
UHGV-0182024_28	eggNOG-mapper	220668.lp_2433	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0182024_28	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0182024_28	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0182024_29	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0182024_29	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0182024_29	UniRef90	UniRef90_UPI001F1C052D	replicative DNA helicase	NA
UHGV-0182024_29	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0182024_29	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0182024_29	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0182024_29	COG	COG0305	Replicative DNA helicase	NA
UHGV-0182024_29	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0182024_30	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0182024_30	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0182024_30	eggNOG-mapper	768710.DesyoDRAFT_5236	DnaD domain protein	NA
UHGV-0182024_30	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0182024_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0182024_30	Structural annotation	PF05584, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0182024_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182024_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182024_31	UniRef90	UniRef90_R6I6X7	Single-stranded DNA-binding protein	NA
UHGV-0182024_31	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0182024_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182024_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182024_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182024_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182024_31	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0182024_32	PHROG	phrog_7566	NA	unknown function
UHGV-0182024_32	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0182024_32	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0182024_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0182024_33	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0182024_33	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0182024_33	Structural annotation	PF05772	NA	NA
UHGV-0182024_34	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182024_34	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0182024_34	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0182024_34	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0182024_35	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0182024_35	UniRef90	UniRef90_E2ZNS5	Siphovirus Gp157	NA
UHGV-0182024_35	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0182024_35	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0182024_35	Structural annotation	PF05565	NA	NA
UHGV-0182024_39	Structural annotation	PF11034	NA	NA
UHGV-0182024_40	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0182024_40	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0182024_41	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0182024_42	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0182024_42	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0182024_42	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0182024_42	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0182024_42	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0182024_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0182024_42	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0182024_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0182024_43	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0182024_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182024_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182024_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0182024_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182024_44	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0182024_44	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0182024_46	eggNOG-mapper	1195236.CTER_1717	NA	NA
UHGV-0182024_46	Structural annotation	PF10358	NA	NA
UHGV-0182024_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182024_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182024_47	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0182024_48	KOfam	K14059	int; integrase	NA
UHGV-0182024_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0182024_48	UniRef90	UniRef90_UPI001897E1C8	site-specific integrase	NA
UHGV-0182024_48	eggNOG-mapper	411471.SUBVAR_07390	Phage integrase family	NA
UHGV-0182024_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182024_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182024_48	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0182024_49	UniRef90	UniRef90_A0A4R1R5G7	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0182024_49	eggNOG-mapper	658088.HMPREF0987_00997	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0182024_49	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0182024_49	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0182024_50	eggNOG-mapper	1506994.JNLQ01000004_gene3618	NA	NA
UHGV-0182024_52	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0182024_55	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0182024_56	PHROG	phrog_1129	holin	lysis
UHGV-0182024_56	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0182024_56	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0182024_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0182024_56	Structural annotation	PF06946	NA	NA
UHGV-0182024_57	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0182024_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0182024_58	PHROG	phrog_291	endolysin	lysis
UHGV-0182024_58	UniRef90	UniRef90_UPI00164A97A0	glycoside hydrolase family 25 protein	NA
UHGV-0182024_58	eggNOG-mapper	537013.CLOSTMETH_03464	Glycosyl hydrolases family 25	NA
UHGV-0182024_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0182024_58	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0182024_58	Structural annotation	PF01183, PF05194, COG3757	NA	NA
UHGV-0182024_60	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0182024_60	Pfam	PF19079	Collagen-flanked surface repeat	CFSR
UHGV-0182024_61	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0182024_62	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0182024_62	Structural annotation	PF20387	NA	NA