UHGV-0182033

Genome information

Genome length 34,580 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182033
vOTU ID	vOTU-046744
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596190
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.49
Jumbo phage	No

Genome content
Genome length	34,580 bps
GC content	60.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.55%
Average CDS length	611.14 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182033_1	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0182033_1	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0182033_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0182033_2	PHROG	phrog_36410	NA	unknown function
UHGV-0182033_2	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-0182033_2	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-0182033_2	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0182033_3	PHROG	phrog_538	minor tail protein	tail
UHGV-0182033_3	UniRef90	UniRef90_UPI0011064D4D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0182033_3	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-0182033_3	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0182033_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0182033_4	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0182033_4	PHROG	phrog_9534	head protein	head and packaging
UHGV-0182033_4	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-0182033_5	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0182033_5	UniRef90	UniRef90_UPI00082DBDF2	NA	NA
UHGV-0182033_5	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0182033_5	Pfam	PF19789	NA	DUF6273
UHGV-0182033_5	Structural annotation	PF19789	NA	NA
UHGV-0182033_6	PHROG	phrog_29248	NA	unknown function
UHGV-0182033_7	PHROG	phrog_2310	NA	unknown function
UHGV-0182033_8	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0182033_8	PHROG	phrog_894	endolysin	lysis
UHGV-0182033_8	UniRef90	UniRef90_A0A1C5NY12	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0182033_8	eggNOG-mapper	748224.HMPREF9436_03320	Peptidase M15	NA
UHGV-0182033_8	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0182033_8	COG	COG3108	NA	NA
UHGV-0182033_8	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0182033_10	PHROG	phrog_4105	NA	unknown function
UHGV-0182033_10	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0182033_11	PHROG	phrog_263	holin	lysis
UHGV-0182033_11	UniRef90	UniRef90_E2ZIC2	Holin, SPP1 family	NA
UHGV-0182033_11	eggNOG-mapper	748224.HMPREF9436_01413	SPP1 phage holin	NA
UHGV-0182033_11	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0182033_11	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0182033_11	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0182033_12	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0182033_12	UniRef90	UniRef90_A0A291T8I8	Spo0A_C domain-containing protein	NA
UHGV-0182033_12	eggNOG-mapper	1226322.HMPREF1545_01110	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0182033_12	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0182033_12	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0182033_12	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0182033_13	KOfam	K14059	int; integrase	NA
UHGV-0182033_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0182033_13	UniRef90	UniRef90_A0A0W7TNE8	Tyr recombinase domain-containing protein	NA
UHGV-0182033_13	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0182033_13	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0182033_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182033_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182033_13	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0182033_15	PHROG	phrog_585	NA	unknown function
UHGV-0182033_15	UniRef90	UniRef90_UPI0011C834AA	NA	NA
UHGV-0182033_15	eggNOG-mapper	1262449.CP6013_2263	NA	NA
UHGV-0182033_15	Pfam	PF10711	NA	DUF2513
UHGV-0182033_15	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0182033_16	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0182033_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182033_16	UniRef90	UniRef90_A0A3A6E835	XRE family transcriptional regulator	NA
UHGV-0182033_16	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0182033_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182033_16	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0182033_16	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0182033_16	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0182033_17	UniRef90	UniRef90_A0A2A7BGV0	HTH_8 domain-containing protein	NA
UHGV-0182033_17	eggNOG-mapper	1033744.CAEL01000029_gene1308	NA	NA
UHGV-0182033_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182033_17	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0182033_18	PHROG	phrog_17486	NA	unknown function
UHGV-0182033_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0182033_21	UniRef90	UniRef90_A0A2A6Z722	Bro-N domain-containing protein	NA
UHGV-0182033_21	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-0182033_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0182033_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0182033_21	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0182033_22	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0182033_22	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0182033_22	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0182033_23	PHROG	phrog_32852	NA	unknown function
UHGV-0182033_26	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-0182033_26	Pfam	PF12957	NA	DUF3846
UHGV-0182033_26	Structural annotation	PF12957	NA	NA
UHGV-0182033_27	Structural annotation	PF03677	NA	NA
UHGV-0182033_28	PHROG	phrog_38771	NA	unknown function
UHGV-0182033_29	PHROG	phrog_674	NA	unknown function
UHGV-0182033_29	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0182033_29	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0182033_29	Pfam	PF07083	NA	DUF1351
UHGV-0182033_29	Structural annotation	PF07083	NA	NA
UHGV-0182033_30	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0182033_30	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0182033_30	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0182033_30	Pfam	PF03837	RecT family	RecT
UHGV-0182033_30	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0182033_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0182033_30	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0182033_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182033_31	eggNOG-mapper	1150599.MPHLEI_23354	Single-stranded DNA-binding protein	NA
UHGV-0182033_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182033_31	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0182033_32	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0182033_32	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0182033_32	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0182033_32	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0182033_32	Pfam	PF00392	Bacterial regulatory proteins, gntR family	GntR
UHGV-0182033_32	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0182033_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0182033_32	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0182033_33	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0182033_33	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0182033_33	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0182033_33	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0182033_35	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0182033_36	PHROG	phrog_21498	NA	unknown function
UHGV-0182033_36	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0182033_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0182033_36	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0182033_37	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0182033_37	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0182033_37	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0182033_37	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0182033_37	Structural annotation	PF16677	NA	NA
UHGV-0182033_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182033_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0182033_38	UniRef90	UniRef90_A0A844EGH8	PBSX family phage terminase large subunit	NA
UHGV-0182033_38	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0182033_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0182033_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0182033_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182033_38	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0182033_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0182033_39	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0182033_39	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0182033_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0182033_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0182033_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0182033_40	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-0182033_40	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-0182033_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0182033_40	COG	COG2369	NA	NA
UHGV-0182033_40	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0182033_42	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0182033_42	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0182033_42	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0182033_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0182033_43	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0182033_43	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0182033_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0182033_43	Structural annotation	PF06810	NA	NA
UHGV-0182033_44	PHROG	phrog_267	major head protein	head and packaging
UHGV-0182033_44	UniRef90	UniRef90_A0A0D8J2H9	p22 coat protein 5	NA
UHGV-0182033_44	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0182033_44	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0182033_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0182033_46	PHROG	phrog_3366	NA	unknown function
UHGV-0182033_46	Pfam	PF20536	NA	DUF6751
UHGV-0182033_46	Structural annotation	PF20536	NA	NA
UHGV-0182033_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0182033_47	UniRef90	UniRef90_A0A2A6Z736	Capsid protein	NA
UHGV-0182033_47	eggNOG-mapper	748224.HMPREF9436_03332	Minor capsid protein	NA
UHGV-0182033_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0182033_47	Structural annotation	PF11114	NA	NA
UHGV-0182033_48	PHROG	phrog_3266	tail completion	connector
UHGV-0182033_48	UniRef90	UniRef90_A0A848BCA5	Chloramphenicol resistance protein	NA
UHGV-0182033_48	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-0182033_48	Structural annotation	PF12691	NA	NA
UHGV-0182033_49	PHROG	phrog_820	major tail protein	tail
UHGV-0182033_49	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-0182033_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0182033_50	PHROG	phrog_4450	NA	unknown function
UHGV-0182033_50	Structural annotation	PF20378	NA	NA
UHGV-0182033_51	PHROG	phrog_706	NA	unknown function
UHGV-0182033_51	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-0182033_51	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0182033_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0182033_51	Structural annotation	PF06854	NA	NA
UHGV-0182033_52	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0182033_52	UniRef90	UniRef90_A0A3F3JUJ4	TMP_3 domain-containing protein	NA
UHGV-0182033_52	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0182033_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0182033_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0182033_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA