UHGV-0182076

Genome information

vOTU vOTU-019818

Genome length 27,988 bps

CDS count 39

Completeness 79.08% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182076
vOTU ID	vOTU-019818
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2737659_a1_ct107037_vs1@Siphoviridae__sp._ctCs41
BioSample	SAMEA2737659
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.31
Jumbo phage	No

Genome content
Genome length	27,988 bps
GC content	45.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.32%
Average CDS length	665.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182076_1	PHROG	phrog_1194	NA	unknown function
UHGV-0182076_1	eggNOG-mapper	1160721.RBI_II00527	NA	NA
UHGV-0182076_1	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0182076_2	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0182076_2	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0182076_2	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-0182076_2	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0182076_2	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0182076_3	PHROG	phrog_706	NA	unknown function
UHGV-0182076_3	UniRef90	UniRef90_UPI001B3C82AE	Gp15 family bacteriophage protein	NA
UHGV-0182076_3	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0182076_3	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0182076_3	Structural annotation	PF06854	NA	NA
UHGV-0182076_4	PHROG	phrog_11299	NA	unknown function
UHGV-0182076_4	Structural annotation	PF20378	NA	NA
UHGV-0182076_5	PHROG	phrog_3099	NA	unknown function
UHGV-0182076_5	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0182076_5	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0182076_6	PHROG	phrog_3266	tail completion	connector
UHGV-0182076_6	eggNOG-mapper	411902.CLOBOL_00130	NA	NA
UHGV-0182076_6	Structural annotation	PF20765	NA	NA
UHGV-0182076_7	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0182076_7	UniRef90	UniRef90_UPI00143BEF55	minor capsid protein	NA
UHGV-0182076_7	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0182076_7	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0182076_7	Structural annotation	PF11114	NA	NA
UHGV-0182076_8	PHROG	phrog_3366	NA	unknown function
UHGV-0182076_8	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0182076_8	Pfam	PF20536	NA	DUF6751
UHGV-0182076_8	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0182076_9	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0182076_9	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0182076_9	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0182076_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0182076_10	UniRef90	UniRef90_R6T873	Major head protein	NA
UHGV-0182076_10	eggNOG-mapper	936580.HMPREF1516_0718	NA	NA
UHGV-0182076_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0182076_10	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0182076_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0182076_11	UniRef90	UniRef90_R6U550	Phage minor structural protein GP20	NA
UHGV-0182076_11	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0182076_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0182076_11	Structural annotation	PF06810	NA	NA
UHGV-0182076_12	Structural annotation	PF12305	NA	NA
UHGV-0182076_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0182076_13	UniRef90	UniRef90_R6SXL7	Phage minor capsid protein 2	NA
UHGV-0182076_13	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0182076_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0182076_13	COG	COG2369	NA	NA
UHGV-0182076_13	Structural annotation	PF06152	NA	NA
UHGV-0182076_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0182076_14	UniRef90	UniRef90_R6TDI6	Phage portal protein SPP1 Gp6-like	NA
UHGV-0182076_14	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0182076_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0182076_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182076_15	PHROG	phrog_18557	terminase large subunit	head and packaging
UHGV-0182076_15	UniRef90	UniRef90_A0A1C6IMR2	Phage terminase, large subunit, PBSX family	NA
UHGV-0182076_15	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0182076_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0182076_15	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0182076_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0182076_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182076_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0182076_16	KOfam	K09161	NA	NA
UHGV-0182076_16	PHROG	phrog_6084	NA	unknown function
UHGV-0182076_16	UniRef90	UniRef90_UPI00189BAEC5	YfbU family protein	NA
UHGV-0182076_16	eggNOG-mapper	536233.CLO_2529	Belongs to the UPF0304 family	NA
UHGV-0182076_16	Pfam	PF03887	YfbU domain	YfbU
UHGV-0182076_16	NCBIFam	NF003936.2	YfbU family protein	NA
UHGV-0182076_16	COG	COG3013	NA	NA
UHGV-0182076_16	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0182076_17	UniRef90	UniRef90_A0A373VND1	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0182076_17	Structural annotation	PF07374	NA	NA
UHGV-0182076_18	PHROG	phrog_25754	NA	unknown function
UHGV-0182076_18	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0182076_18	Structural annotation	PF10842, MF_00436, TIGR02383	NA	NA
UHGV-0182076_19	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182076_19	UniRef90	UniRef90_A0A373XQS7	NA	NA
UHGV-0182076_19	eggNOG-mapper	2754.EH55_06950	NA	NA
UHGV-0182076_19	Pfam	PF12961	NA	DUF3850
UHGV-0182076_19	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0182076_21	PHROG	phrog_824	NA	unknown function
UHGV-0182076_21	UniRef90	UniRef90_A0A373V639	VRR-NUC domain-containing protein	NA
UHGV-0182076_21	eggNOG-mapper	641107.CDLVIII_1315	VRR-NUC domain	NA
UHGV-0182076_21	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0182076_21	Structural annotation	PF08774	NA	NA
UHGV-0182076_22	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0182076_22	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0182076_22	UniRef90	UniRef90_A0A373V5W0	ATP-dependent helicase	NA
UHGV-0182076_22	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0182076_22	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0182076_22	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0182076_22	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0182076_22	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0182076_22	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0182076_23	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0182076_23	UniRef90	UniRef90_A0A1C6FHQ3	Superfamily II helicase and inactivated derivatives	NA
UHGV-0182076_23	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0182076_23	Pfam	PF06048	NA	DUF927
UHGV-0182076_23	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0182076_23	COG	COG5519	NA	NA
UHGV-0182076_23	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0182076_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182076_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182076_24	UniRef90	UniRef90_A0A1C6FIL5	Helix-destabilizing protein	NA
UHGV-0182076_24	eggNOG-mapper	1121370.AQUY01000001_gene1006	Single-strand binding protein family	NA
UHGV-0182076_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182076_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182076_24	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0182076_25	PHROG	phrog_3657	NA	unknown function
UHGV-0182076_25	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-0182076_26	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0182076_26	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0182076_26	UniRef90	UniRef90_A0A1C6FHM2	Exodeoxyribonuclease 8	NA
UHGV-0182076_26	eggNOG-mapper	1454004.AW11_02382	NA	NA
UHGV-0182076_26	Pfam	PF12684	NA	DUF3799
UHGV-0182076_26	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0182076_26	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0182076_34	Structural annotation	PF01775, MF_00273, NF010188	NA	NA
UHGV-0182076_35	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182076_35	UniRef90	UniRef90_A0A373SN33	NA	NA
UHGV-0182076_35	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0182076_35	Structural annotation	COG2250	NA	NA
UHGV-0182076_36	UniRef90	UniRef90_R6TEQ2	Conserved domain protein	NA
UHGV-0182076_36	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0182076_36	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0182076_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0182076_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182076_37	UniRef90	UniRef90_R6T2B0	Peptidase S24-like protein	NA
UHGV-0182076_37	eggNOG-mapper	246199.CUS_5911	NA	NA
UHGV-0182076_37	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0182076_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0182076_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0182076_37	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0182076_38	PHROG	phrog_10292	NA	unknown function
UHGV-0182076_38	UniRef90	UniRef90_R6T9F1	TM2 domain-containing protein	NA
UHGV-0182076_38	eggNOG-mapper	537013.CLOSTMETH_02269	TM2 domain	NA
UHGV-0182076_38	Pfam	PF05154	TM2 domain	TM2
UHGV-0182076_38	COG	COG2314	NA	NA
UHGV-0182076_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0182076_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0182076_39	UniRef90	UniRef90_A0A3D4JJV8	Recombinase family protein	NA
UHGV-0182076_39	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-0182076_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0182076_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-0182076_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0182076_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0182076_39	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA