UHGV-0182144

Genome information

Genome length 37,336 bps

CDS count 65

Completeness 80.07% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182144
vOTU ID	vOTU-016571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597648
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.45
Jumbo phage	No

Genome content
Genome length	37,336 bps
GC content	41.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	93.41%
Average CDS length	541.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182144_1	KOfam	K14059	int; integrase	NA
UHGV-0182144_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0182144_1	UniRef90	UniRef90_G9YK08	Site-specific recombinase, phage integrase family	NA
UHGV-0182144_1	eggNOG-mapper	861450.HMPREF0080_02017	Belongs to the 'phage' integrase family	NA
UHGV-0182144_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0182144_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182144_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182144_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0182144_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0182144_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182144_3	UniRef90	UniRef90_A0A133PK56	DNA-binding helix-turn-helix protein	NA
UHGV-0182144_3	eggNOG-mapper	1111134.HMPREF1253_1209	Peptidase S24-like	NA
UHGV-0182144_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182144_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0182144_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0182144_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0182144_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0182144_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0182144_4	UniRef90	UniRef90_E0NXN1	DNA-binding helix-turn-helix protein	NA
UHGV-0182144_4	eggNOG-mapper	864563.HMPREF9166_0598	DNA-binding helix-turn-helix protein	NA
UHGV-0182144_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182144_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182144_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0182144_8	PHROG	phrog_7338	NA	unknown function
UHGV-0182144_8	UniRef90	UniRef90_A0A1G6KQV8	DNA binding domain-containing protein, excisionase family	NA
UHGV-0182144_8	eggNOG-mapper	273068.TTE2123	Excisionase from transposon Tn916	NA
UHGV-0182144_8	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0182144_13	PHROG	phrog_14970	NA	unknown function
UHGV-0182144_13	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0182144_13	eggNOG-mapper	272562.CA_C1936	double-strand break repair protein	NA
UHGV-0182144_13	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0182144_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0182144_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0182144_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0182144_14	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0182144_14	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0182144_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0182144_16	PHROG	phrog_7566	NA	unknown function
UHGV-0182144_16	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0182144_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0182144_17	UniRef90	UniRef90_UPI001072EADE	DNA replication protein DnaD	NA
UHGV-0182144_17	eggNOG-mapper	588581.Cpap_1481	DnaD domain protein	NA
UHGV-0182144_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0182144_17	Structural annotation	TIGR01610	NA	NA
UHGV-0182144_19	PHROG	phrog_7964	NA	unknown function
UHGV-0182144_19	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-0182144_19	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0182144_19	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0182144_19	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0182144_19	Structural annotation	NF040481, COG2171	NA	NA
UHGV-0182144_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0182144_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0182144_20	UniRef90	UniRef90_A0A837R2P0	Methyltransferase	NA
UHGV-0182144_20	eggNOG-mapper	1217656.F964_00563	DNA methylase	NA
UHGV-0182144_20	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0182144_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0182144_20	COG	COG0863	DNA modification methylase	NA
UHGV-0182144_20	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0182144_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0182144_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0182144_22	UniRef90	UniRef90_A0A316S792	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0182144_22	eggNOG-mapper	693746.OBV_41630	C-5 cytosine-specific DNA methylase	NA
UHGV-0182144_22	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0182144_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0182144_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0182144_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0182144_22	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0182144_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0182144_24	UniRef90	UniRef90_UPI000F0C6FA4	NA	NA
UHGV-0182144_24	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0182144_24	Pfam	PF06356	NA	DUF1064
UHGV-0182144_24	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0182144_25	PHROG	phrog_2776	NA	unknown function
UHGV-0182144_25	UniRef90	UniRef90_K8E4E2	Lin2596 protein	NA
UHGV-0182144_25	eggNOG-mapper	663241.C9E2P0_9CAUD	NA	NA
UHGV-0182144_25	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0182144_26	PHROG	phrog_8514	NA	unknown function
UHGV-0182144_28	PHROG	phrog_1997	NA	unknown function
UHGV-0182144_32	PHROG	phrog_11227	protease	other
UHGV-0182144_32	UniRef90	UniRef90_A0A3C0IT61	Membrane protease subunit	NA
UHGV-0182144_32	eggNOG-mapper	716544.wcw_0668	NA	NA
UHGV-0182144_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182144_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182144_33	UniRef90	UniRef90_UPI000F0C363F	single-stranded DNA-binding protein	NA
UHGV-0182144_33	eggNOG-mapper	1262914.BN533_00181	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0182144_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182144_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182144_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182144_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182144_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0182144_35	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0182144_35	Structural annotation	PF13384	NA	NA
UHGV-0182144_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0182144_36	UniRef90	UniRef90_A0A7X2XHL2	NA	NA
UHGV-0182144_36	eggNOG-mapper	994573.T472_0214010	sigma factor activity	NA
UHGV-0182144_36	Pfam	PF07374	NA	DUF1492
UHGV-0182144_36	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0182144_36	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0182144_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0182144_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182144_38	UniRef90	UniRef90_A0A7G6E8W2	HNH endonuclease	NA
UHGV-0182144_38	eggNOG-mapper	1536773.R70331_25755	HNH nucleases	NA
UHGV-0182144_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0182144_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0182144_39	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0182144_39	UniRef90	UniRef90_F4A0W0	Phage terminase, small subunit, P27 family	NA
UHGV-0182144_39	eggNOG-mapper	697281.Mahau_2916	Phage terminase, small subunit	NA
UHGV-0182144_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0182144_39	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0182144_39	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0182144_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0182144_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0182144_40	UniRef90	UniRef90_A0A1M6SAD9	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0182144_40	eggNOG-mapper	333138.LQ50_04330	Terminase	NA
UHGV-0182144_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0182144_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0182144_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0182144_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0182144_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0182144_41	UniRef90	UniRef90_A0A316S9L1	Phage portal protein	NA
UHGV-0182144_41	eggNOG-mapper	1449126.JQKL01000051_gene3172	Phage portal protein	NA
UHGV-0182144_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0182144_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0182144_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0182144_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0182144_42	KOfam	K06904	NA	NA
UHGV-0182144_42	PHROG	phrog_617	major head protein	head and packaging
UHGV-0182144_42	UniRef90	UniRef90_R5AV89	Phage prohead protease HK97 family	NA
UHGV-0182144_42	eggNOG-mapper	1262914.BN533_00197	Phage prohead protease, HK97 family	NA
UHGV-0182144_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0182144_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0182144_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0182144_43	UniRef90	UniRef90_A0A2W4K1G8	Phage major capsid protein	NA
UHGV-0182144_43	eggNOG-mapper	1536773.R70331_25720	Phage capsid family	NA
UHGV-0182144_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0182144_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0182144_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0182144_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182144_45	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0182144_45	UniRef90	UniRef90_A0A8H9QVG1	Phage gp6-like head-tail connector protein	NA
UHGV-0182144_45	eggNOG-mapper	1262914.BN533_00195	Phage gp6-like head-tail connector protein	NA
UHGV-0182144_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0182144_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0182144_45	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0182144_46	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0182144_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0182144_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0182144_47	UniRef90	UniRef90_UPI000F0C5A82	HK97 gp10 family phage protein	NA
UHGV-0182144_47	eggNOG-mapper	1262914.BN533_00193	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0182144_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0182144_47	COG	COG5005	NA	NA
UHGV-0182144_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0182144_48	Structural annotation	PF16807	NA	NA
UHGV-0182144_49	PHROG	phrog_1407	major tail protein	tail
UHGV-0182144_49	UniRef90	UniRef90_R6I4H1	Phage major tail protein TP901-1 family	NA
UHGV-0182144_49	eggNOG-mapper	1262914.BN533_00191	Phage tail tube protein	NA
UHGV-0182144_49	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0182144_49	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0182144_52	PHROG	phrog_12798	NA	unknown function
UHGV-0182144_52	UniRef90	UniRef90_UPI00103281AA	tape measure protein	NA
UHGV-0182144_52	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-0182144_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0182144_52	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0182144_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0182144_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0182144_53	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0182144_53	UniRef90	UniRef90_A0A7X7U7G6	Phage tail protein	NA
UHGV-0182144_53	eggNOG-mapper	568816.Acin_1906	Phage tail protein	NA
UHGV-0182144_53	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0182144_53	Structural annotation	PF20753, PF19512, TIGR01633, COG4722	NA	NA
UHGV-0182144_54	eggNOG-mapper	568816.Acin_1905	NA	NA
UHGV-0182144_54	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0182144_55	eggNOG-mapper	2754.EH55_13265	NA	NA
UHGV-0182144_56	Structural annotation	PF12245, TIGR04183	NA	NA
UHGV-0182144_57	PHROG	phrog_32311	NA	unknown function
UHGV-0182144_57	eggNOG-mapper	428125.CLOLEP_00897	PFAM Collagen triple helix	NA
UHGV-0182144_57	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0182144_59	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0182144_59	UniRef90	UniRef90_UPI001032F78F	NA	NA
UHGV-0182144_59	eggNOG-mapper	1009370.ALO_04638	NA	NA
UHGV-0182144_59	Pfam	PF14301	NA	DUF4376
UHGV-0182144_59	Structural annotation	PF14301	NA	NA
UHGV-0182144_60	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0182144_62	eggNOG-mapper	373903.Hore_18550	Peptidoglycan-binding domain 1 protein	NA
UHGV-0182144_62	COG	COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	NA
UHGV-0182144_62	Structural annotation	PF03734, NF007563, COG1376	NA	NA
UHGV-0182144_64	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0182144_64	UniRef90	UniRef90_S7IX76	Putative inner membrane protein	NA
UHGV-0182144_64	eggNOG-mapper	1273103.NM10_11541	NA	NA
UHGV-0182144_64	Pfam	PF10097	NA	DUF2335
UHGV-0182144_64	COG	COG5346	NA	NA