UHGV-0182150

Genome information

Genome length 31,019 bps

CDS count 40

Completeness 88.16% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182150
vOTU ID	vOTU-029288
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597637
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.28
Jumbo phage	No

Genome content
Genome length	31,019 bps
GC content	39.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	90.67%
Average CDS length	705.30 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182150_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0182150_1	PHROG	phrog_20388	endolysin	lysis
UHGV-0182150_1	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0182150_1	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0182150_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0182150_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0182150_1	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-0182150_2	PHROG	phrog_918	NA	unknown function
UHGV-0182150_2	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0182150_2	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0182150_2	Pfam	PF19791	NA	DUF6275
UHGV-0182150_2	Structural annotation	PF19791	NA	NA
UHGV-0182150_3	PHROG	phrog_199	holin	lysis
UHGV-0182150_3	UniRef90	UniRef90_A0A2N0ULW7	Holin	NA
UHGV-0182150_3	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0182150_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0182150_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0182150_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0182150_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0182150_5	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0182150_5	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0182150_6	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0182150_6	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0182150_6	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0182150_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0182150_6	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0182150_6	COG	COG1511	NA	NA
UHGV-0182150_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0182150_7	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0182150_7	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0182150_7	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0182150_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0182150_7	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0182150_8	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0182150_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0182150_8	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0182150_8	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0182150_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0182150_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0182150_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0182150_9	Structural annotation	PF11836	NA	NA
UHGV-0182150_10	PHROG	phrog_88	major tail protein	tail
UHGV-0182150_10	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-0182150_10	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0182150_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0182150_10	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0182150_11	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0182150_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0182150_11	Structural annotation	TIGR01725	NA	NA
UHGV-0182150_12	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0182150_13	PHROG	phrog_19734	NA	unknown function
UHGV-0182150_13	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0182150_13	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0182150_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0182150_14	PHROG	phrog_749	NA	unknown function
UHGV-0182150_14	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0182150_14	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0182150_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0182150_15	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0182150_15	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0182150_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0182150_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0182150_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0182150_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182150_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0182150_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0182150_16	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0182150_16	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0182150_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0182150_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0182150_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0182150_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0182150_17	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0182150_17	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0182150_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0182150_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0182150_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0182150_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0182150_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0182150_18	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0182150_18	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0182150_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0182150_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0182150_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0182150_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0182150_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0182150_19	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0182150_19	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0182150_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0182150_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0182150_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182150_20	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0182150_20	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0182150_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0182150_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0182150_21	PHROG	phrog_31049	NA	unknown function
UHGV-0182150_21	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0182150_21	Structural annotation	TIGR01636	NA	NA
UHGV-0182150_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0182150_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0182150_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0182150_25	PHROG	phrog_824	NA	unknown function
UHGV-0182150_25	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0182150_25	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0182150_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0182150_25	Structural annotation	PF08774	NA	NA
UHGV-0182150_26	PHROG	phrog_24518	NA	unknown function
UHGV-0182150_26	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0182150_27	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0182150_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0182150_27	UniRef90	UniRef90_A0A374N9T4	XRE family transcriptional regulator	NA
UHGV-0182150_27	eggNOG-mapper	717605.Theco_0106	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0182150_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0182150_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182150_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0182150_27	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0182150_28	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0182150_28	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0182150_28	UniRef90	UniRef90_A0A356CYE0	N-6 DNA methylase	NA
UHGV-0182150_28	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0182150_28	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0182150_28	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0182150_28	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0182150_28	Structural annotation	PF02384, PF01420, MF_01872, TIGR00497, COG0286, COG0732	NA	NA
UHGV-0182150_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0182150_29	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0182150_29	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0182150_29	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0182150_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0182150_29	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0182150_29	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0182150_29	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0182150_31	PHROG	phrog_6058	NA	unknown function
UHGV-0182150_31	Structural annotation	NF033787	NA	NA
UHGV-0182150_32	PHROG	phrog_8684	NA	unknown function
UHGV-0182150_32	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0182150_32	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0182150_32	Pfam	PF09643	YopX protein	YopX
UHGV-0182150_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0182150_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0182150_33	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0182150_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0182150_33	Structural annotation	NF007260	NA	NA
UHGV-0182150_34	PHROG	phrog_585	NA	unknown function
UHGV-0182150_34	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0182150_34	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0182150_34	Pfam	PF10711	NA	DUF2513
UHGV-0182150_34	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0182150_36	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0182150_36	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0182150_37	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0182150_37	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0182150_37	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0182150_38	PHROG	phrog_1914	NA	unknown function
UHGV-0182150_38	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0182150_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0182150_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0182150_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0182150_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0182150_39	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0182150_39	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0182150_39	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0182150_40	KOfam	K14059	int; integrase	NA
UHGV-0182150_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0182150_40	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0182150_40	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0182150_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182150_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0182150_40	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA