UHGV-0182248

Genome information

Genome length 37,801 bps

CDS count 57

Completeness 93.36% (high-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182248
vOTU ID	vOTU-079094
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594184
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.41
Jumbo phage	No

Genome content
Genome length	37,801 bps
GC content	55.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.25%
Average CDS length	602.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182248_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182248_1	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0182248_1	eggNOG-mapper	1007103.AFHW01000096_gene3242	HNH nucleases	NA
UHGV-0182248_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0182248_2	PHROG	phrog_11237	NA	unknown function
UHGV-0182248_2	eggNOG-mapper	742740.HMPREF9474_02326	NA	NA
UHGV-0182248_3	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0182248_3	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0182248_3	Structural annotation	PF21578	NA	NA
UHGV-0182248_4	PHROG	phrog_24368	NA	unknown function
UHGV-0182248_5	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0182248_5	UniRef90	UniRef90_A0A8H9YLQ0	NA	NA
UHGV-0182248_5	eggNOG-mapper	399741.Spro_4945	NA	NA
UHGV-0182248_5	Pfam	PF06356	NA	DUF1064
UHGV-0182248_5	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0182248_6	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0182248_6	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0182248_6	UniRef90	UniRef90_UPI001F030AE8	ParB/RepB/Spo0J family partition protein	NA
UHGV-0182248_6	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0182248_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0182248_6	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0182248_6	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0182248_6	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0182248_18	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0182248_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0182248_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182248_22	UniRef90	UniRef90_UPI001C3B03CA	Helix-turn-helix transcriptional regulator	NA
UHGV-0182248_22	eggNOG-mapper	1203606.HMPREF1526_01317	Helix-turn-helix XRE-family like proteins	NA
UHGV-0182248_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182248_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182248_22	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0182248_24	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0182248_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182248_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182248_24	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0182248_26	KOfam	K14059	int; integrase	NA
UHGV-0182248_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0182248_26	UniRef90	UniRef90_A0A416ZBA5	Site-specific integrase	NA
UHGV-0182248_26	eggNOG-mapper	1294142.CINTURNW_1001	Belongs to the 'phage' integrase family	NA
UHGV-0182248_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0182248_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182248_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182248_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0182248_30	Structural annotation	PF07878, NF041264, COG4710	NA	NA
UHGV-0182248_35	eggNOG-mapper	1499683.CCFF01000016_gene802	NA	NA
UHGV-0182248_36	PHROG	phrog_937	hemolysin	other
UHGV-0182248_37	PHROG	phrog_14030	NA	unknown function
UHGV-0182248_37	UniRef90	UniRef90_A0A416FZN6	PG_binding_1 domain-containing protein	NA
UHGV-0182248_37	eggNOG-mapper	411461.DORFOR_00720	NA	NA
UHGV-0182248_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0182248_37	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0182248_37	Structural annotation	PF01471, PF18342, TIGR02869, TIGR04457, COG4991	NA	NA
UHGV-0182248_38	eggNOG-mapper	1230342.CTM_17037	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0182248_38	Structural annotation	PF00927, PF03422, MF_04116, NF040680, COG4326	NA	NA
UHGV-0182248_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0182248_41	UniRef90	UniRef90_A0A1Q6PU45	SH3b domain-containing protein	NA
UHGV-0182248_41	eggNOG-mapper	1415774.U728_1242	Phage minor structural protein	NA
UHGV-0182248_41	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0182248_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0182248_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0182248_41	COG	COG4926	Phage-related protein	NA
UHGV-0182248_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0182248_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0182248_42	UniRef90	UniRef90_A0A136WGB8	Phage tail protein	NA
UHGV-0182248_42	eggNOG-mapper	1414720.CBYM010000005_gene1383	tail component	NA
UHGV-0182248_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0182248_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0182248_43	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0182248_43	eggNOG-mapper	1476973.JMMB01000007_gene1771	Phage-related minor tail protein	NA
UHGV-0182248_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0182248_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0182248_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0182248_44	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0182248_45	PHROG	phrog_88	major tail protein	tail
UHGV-0182248_45	UniRef90	UniRef90_A0A174HPA5	Phage major tail protein, phi13 family	NA
UHGV-0182248_45	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-0182248_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0182248_45	COG	COG5492	NA	NA
UHGV-0182248_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0182248_46	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0182248_47	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0182248_47	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0182248_47	COG	COG5492	NA	NA
UHGV-0182248_47	Structural annotation	PF05657	NA	NA
UHGV-0182248_48	UniRef90	UniRef90_UPI00164B7AD3	phage head closure protein	NA
UHGV-0182248_48	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0182248_48	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0182248_49	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0182248_49	UniRef90	UniRef90_A0A7S8C282	Phage head-tail connector protein	NA
UHGV-0182248_49	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-0182248_49	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0182248_49	NCBIFam	TIGR02215.1	phage conserved hypothetical protein, phiE125 gp8 family	NA
UHGV-0182248_49	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0182248_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-0182248_51	UniRef90	UniRef90_A0A1V5WB68	Phage capsid family protein	NA
UHGV-0182248_51	eggNOG-mapper	29306.JOBE01000011_gene7273	capsid protein	NA
UHGV-0182248_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0182248_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0182248_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0182248_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182248_52	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0182248_52	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0182248_52	UniRef90	UniRef90_UPI00164B0DA5	Clp protease ClpP	NA
UHGV-0182248_52	eggNOG-mapper	748727.CLJU_c03550	Belongs to the peptidase S14 family	NA
UHGV-0182248_52	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0182248_52	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0182248_52	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0182248_53	PHROG	phrog_12	portal protein	head and packaging
UHGV-0182248_53	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0182248_53	eggNOG-mapper	663278.Ethha_1836	Phage portal protein, HK97 family	NA
UHGV-0182248_53	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0182248_53	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0182248_53	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0182248_53	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0182248_54	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0182248_54	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0182248_54	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0182248_54	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0182248_54	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0182248_54	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0182248_54	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0182248_55	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0182248_55	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0182248_55	eggNOG-mapper	1508644.SFBmNL_00836	Phage terminase, small subunit	NA
UHGV-0182248_55	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0182248_55	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0182248_55	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0182248_55	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0182248_56	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0182248_56	UniRef90	UniRef90_A0A812FTV0	Sulfate reduction	NA
UHGV-0182248_56	eggNOG-mapper	1331060.RLDS_11480	sulfate reduction	NA
UHGV-0182248_56	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA