UHGV-0182379

Genome information

Genome length 15,306 bps

CDS count 24

Completeness 97.48% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182379
vOTU ID	vOTU-070958
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598251
BioSample	SAMN10407349
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.95
Jumbo phage	No

Genome content
Genome length	15,306 bps
GC content	49.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	86.85%
Average CDS length	555.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182379_1	KOfam	K14059	int; integrase	NA
UHGV-0182379_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0182379_1	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-0182379_1	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-0182379_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182379_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182379_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0182379_2	UniRef90	UniRef90_UPI001F3CD799	helix-turn-helix domain-containing protein	NA
UHGV-0182379_2	eggNOG-mapper	1235797.C816_00778	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0182379_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0182379_3	Pfam	PF19808	NA	DUF6291
UHGV-0182379_10	eggNOG-mapper	1211814.CAPG01000097_gene4376	NA	NA
UHGV-0182379_10	Structural annotation	NF041728	NA	NA
UHGV-0182379_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182379_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0182379_11	UniRef90	UniRef90_R9JJE2	PBSX family phage terminase, large subunit	NA
UHGV-0182379_11	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0182379_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0182379_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0182379_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0182379_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182379_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0182379_13	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0182379_13	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0182379_13	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0182379_14	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0182379_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0182379_14	eggNOG-mapper	573061.Clocel_0792	tail tape measure protein	NA
UHGV-0182379_14	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0182379_14	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0182379_15	PHROG	phrog_11299	NA	unknown function
UHGV-0182379_15	eggNOG-mapper	1235797.C816_04185	NA	NA
UHGV-0182379_15	Structural annotation	PF10666	NA	NA
UHGV-0182379_16	PHROG	phrog_706	NA	unknown function
UHGV-0182379_16	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0182379_16	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0182379_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0182379_16	Structural annotation	PF06854	NA	NA
UHGV-0182379_19	eggNOG-mapper	877420.ATVW01000018_gene1667	NA	NA
UHGV-0182379_20	UniRef90	UniRef90_A0A3F3K1J1	XRE family transcriptional regulator	NA
UHGV-0182379_20	eggNOG-mapper	1378168.N510_01451	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0182379_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0182379_20	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0182379_21	Structural annotation	PF02211	NA	NA
UHGV-0182379_22	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0182379_22	UniRef90	UniRef90_A0A6N2UJ25	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0182379_22	eggNOG-mapper	411459.RUMOBE_01391	NA	NA
UHGV-0182379_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0182379_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0182379_22	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA