UHGV-0182389

Genome information

Genome length 71,432 bps

CDS count 92

Completeness 98.26% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182389
vOTU ID	vOTU-009325
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596118
BioSample	SAMN09781713
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.26% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.25
Jumbo phage	No

Genome content
Genome length	71,432 bps
GC content	45.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	89.63%
Average CDS length	699.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182389_6	UniRef90	UniRef90_A0A3R6AB47	N-acetyltransferase	NA
UHGV-0182389_6	eggNOG-mapper	1033734.CAET01000038_gene163	acetyltransferase	NA
UHGV-0182389_6	Pfam	PF13508	Acetyltransferase (GNAT) domain	Acetyltransf_7
UHGV-0182389_6	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0182389_6	Structural annotation	PF13673, MF_02018, NF000487, COG3153	NA	NA
UHGV-0182389_9	PHROG	phrog_21668	NA	unknown function
UHGV-0182389_10	UniRef90	UniRef90_A0A7H1MQK0	Fructan hydrolase	NA
UHGV-0182389_10	eggNOG-mapper	483215.BACFIN_05621	NA	NA
UHGV-0182389_11	Structural annotation	PF17457	NA	NA
UHGV-0182389_12	PHROG	phrog_8684	NA	unknown function
UHGV-0182389_12	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-0182389_12	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0182389_12	Pfam	PF09643	YopX protein	YopX
UHGV-0182389_12	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0182389_14	PHROG	phrog_1374	NA	unknown function
UHGV-0182389_14	eggNOG-mapper	1391428.V5KSB1_9CAUD	NA	NA
UHGV-0182389_15	Structural annotation	PF09560	NA	NA
UHGV-0182389_18	Structural annotation	PF14120	NA	NA
UHGV-0182389_19	UniRef90	UniRef90_A0A1Y4AP31	PcfJ-like protein	NA
UHGV-0182389_19	eggNOG-mapper	879243.Poras_1549	PcfJ-like protein	NA
UHGV-0182389_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0182389_19	Structural annotation	PF14284	NA	NA
UHGV-0182389_20	PHROG	phrog_7445	NA	unknown function
UHGV-0182389_20	UniRef90	UniRef90_A0A8E4ZJ44	PcfK-like protein	NA
UHGV-0182389_20	eggNOG-mapper	742766.HMPREF9455_01852	PcfK-like protein	NA
UHGV-0182389_20	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0182389_20	Structural annotation	PF14058	NA	NA
UHGV-0182389_21	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0182389_21	Structural annotation	PF14207	NA	NA
UHGV-0182389_29	UniRef90	UniRef90_A0A3R6LFQ0	XRE family transcriptional regulator	NA
UHGV-0182389_29	eggNOG-mapper	1122991.BAIZ01000025_gene1903	NA	NA
UHGV-0182389_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182389_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182389_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0182389_31	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0182389_34	PHROG	phrog_14770	NA	unknown function
UHGV-0182389_34	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-0182389_34	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0182389_34	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0182389_34	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0182389_34	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0182389_34	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0182389_34	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0182389_35	eggNOG-mapper	1196322.A370_04915	NA	NA
UHGV-0182389_37	PHROG	phrog_25468	NA	unknown function
UHGV-0182389_37	Pfam	PF05658	YadA head domain repeat (2 copies)	YadA_head
UHGV-0182389_40	Structural annotation	PF17994	NA	NA
UHGV-0182389_41	Structural annotation	PF17212	NA	NA
UHGV-0182389_43	PHROG	phrog_26635	NA	unknown function
UHGV-0182389_43	eggNOG-mapper	742817.HMPREF9449_01785	NA	NA
UHGV-0182389_43	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-0182389_44	PHROG	phrog_22323	NA	unknown function
UHGV-0182389_44	eggNOG-mapper	1121098.HMPREF1534_01121	NA	NA
UHGV-0182389_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0182389_46	eggNOG-mapper	679191.HMPREF9018_0455	NA	NA
UHGV-0182389_46	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0182389_48	Structural annotation	PF02368	NA	NA
UHGV-0182389_51	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0182389_51	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-0182389_51	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-0182389_51	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0182389_51	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0182389_52	PHROG	phrog_32516	NA	unknown function
UHGV-0182389_52	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-0182389_52	Structural annotation	PF11134, COG2706	NA	NA
UHGV-0182389_53	UniRef90	UniRef90_UPI001F1CD6B6	rhomboid family intramembrane serine protease	NA
UHGV-0182389_53	eggNOG-mapper	1121098.HMPREF1534_01123	Rhomboid family	NA
UHGV-0182389_53	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-0182389_54	PHROG	phrog_27246	NA	unknown function
UHGV-0182389_54	eggNOG-mapper	563031.HMPREF0666_01149	NA	NA
UHGV-0182389_55	eggNOG-mapper	1122621.ATZA01000050_gene2920	NA	NA
UHGV-0182389_56	PHROG	phrog_38431	NA	unknown function
UHGV-0182389_56	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0182389_56	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-0182389_58	PHROG	phrog_28898	NA	unknown function
UHGV-0182389_58	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0182389_58	Structural annotation	PF10781	NA	NA
UHGV-0182389_59	PHROG	phrog_31654	NA	unknown function
UHGV-0182389_59	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0182389_60	PHROG	phrog_16490	NA	unknown function
UHGV-0182389_60	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0182389_60	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0182389_61	UniRef90	UniRef90_A0A8F1B604	Excisionase, terminase small subunit	NA
UHGV-0182389_61	Structural annotation	PF05930, TIGR01764, COG3311	NA	NA
UHGV-0182389_62	eggNOG-mapper	226186.BT_4444	NA	NA
UHGV-0182389_63	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0182389_63	PHROG	phrog_181	endolysin	lysis
UHGV-0182389_63	UniRef90	UniRef90_A0A6A7U2A4	Glycoside hydrolase family 19 protein	NA
UHGV-0182389_63	eggNOG-mapper	220664.PFL_2018	pyocin R, lytic enzyme	NA
UHGV-0182389_63	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0182389_63	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0182389_63	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0182389_64	PHROG	phrog_15037	NA	unknown function
UHGV-0182389_64	UniRef90	UniRef90_UPI001C46F9DA	phage holin family protein	NA
UHGV-0182389_64	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0182389_64	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0182389_65	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0182389_65	PHROG	phrog_1	integrase	integration and excision
UHGV-0182389_65	UniRef90	UniRef90_UPI001E523719	site-specific integrase	NA
UHGV-0182389_65	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0182389_65	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0182389_65	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0182389_65	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182389_65	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0182389_65	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0182389_66	UniRef90	UniRef90_UPI001F3A91FA	helix-turn-helix domain-containing protein	NA
UHGV-0182389_66	eggNOG-mapper	946077.W5A_12031	Helix-turn-helix XRE-family like proteins	NA
UHGV-0182389_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182389_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0182389_66	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0182389_67	PHROG	phrog_16858	NA	unknown function
UHGV-0182389_67	UniRef90	UniRef90_A0A3D6B2E4	ArsR family transcriptional regulator	NA
UHGV-0182389_67	Structural annotation	PF08587	NA	NA
UHGV-0182389_70	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0182389_70	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182389_70	UniRef90	UniRef90_UPI001F328015	AAA family ATPase	NA
UHGV-0182389_70	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0182389_70	PADLOC	AAA_15	NA	NA
UHGV-0182389_70	Pfam	PF13476	AAA domain	AAA_23
UHGV-0182389_70	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0182389_70	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0182389_71	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0182389_72	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0182389_72	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0182389_72	UniRef90	UniRef90_UPI001F2ABE86	recombinase RecT	NA
UHGV-0182389_72	eggNOG-mapper	1122985.HMPREF1991_02240	Recombinase, phage RecT family	NA
UHGV-0182389_72	Pfam	PF03837	RecT family	RecT
UHGV-0182389_72	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0182389_72	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0182389_72	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0182389_73	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0182389_73	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0182389_73	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0182389_73	eggNOG-mapper	1392486.JIAF01000004_gene2638	NA	NA
UHGV-0182389_73	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0182389_73	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0182389_73	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-0182389_75	Structural annotation	NF001644	NA	NA
UHGV-0182389_76	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0182389_77	UniRef90	UniRef90_UPI001F322840	NA	NA
UHGV-0182389_77	eggNOG-mapper	470145.BACCOP_00755	COG NOG19098 non supervised orthologous group	NA
UHGV-0182389_77	Pfam	PF11325	NA	DUF3127
UHGV-0182389_77	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182389_77	Structural annotation	PF11325, MF_00720, NF005674, COG2965	NA	NA
UHGV-0182389_78	PHROG	phrog_19415	NA	unknown function
UHGV-0182389_78	UniRef90	UniRef90_A0A413BUX7	RepL domain-containing protein	NA
UHGV-0182389_78	eggNOG-mapper	294631.Q5ZGB4_9CAUD	NA	NA
UHGV-0182389_78	Structural annotation	PF20024, MF_01819, NF041413, COG1959	NA	NA
UHGV-0182389_79	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0182389_79	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0182389_79	UniRef90	UniRef90_A0A1M6ES02	DNA replication protein DnaC	NA
UHGV-0182389_79	eggNOG-mapper	679190.HMPREF0650_0106	NA	NA
UHGV-0182389_79	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0182389_83	Structural annotation	PF15057, COG5475	NA	NA
UHGV-0182389_84	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182389_84	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0182389_84	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0182389_89	PHROG	phrog_10066	NA	unknown function
UHGV-0182389_90	PHROG	phrog_874	NA	unknown function
UHGV-0182389_90	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0182389_90	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0182389_91	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0182389_91	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA