UHGV-0182467

Genome information

vOTU vOTU-019777

Genome length 37,627 bps

CDS count 52

Completeness 87.47% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182467
vOTU ID	vOTU-019777
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594540
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.39
Jumbo phage	No

Genome content
Genome length	37,627 bps
GC content	57.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	89.87%
Average CDS length	655.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182467_2	eggNOG-mapper	268407.PWYN_12490	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0182467_2	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0182467_2	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0182467_3	Structural annotation	PF08703, TIGR04319, COG3524	NA	NA
UHGV-0182467_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0182467_5	eggNOG-mapper	1449126.JQKL01000046_gene2081	NA	NA
UHGV-0182467_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0182467_5	Structural annotation	PF11134, MF_03022, NF010237, TIGR04362, COG5276	NA	NA
UHGV-0182467_6	Structural annotation	PF20387	NA	NA
UHGV-0182467_8	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0182467_8	UniRef90	UniRef90_A0A316LK11	N4-gp56 family major capsid protein	NA
UHGV-0182467_8	eggNOG-mapper	935837.JAEK01000054_gene1469	NA	NA
UHGV-0182467_8	Pfam	PF13252	NA	DUF4043
UHGV-0182467_8	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0182467_8	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0182467_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0182467_10	eggNOG-mapper	935837.JAEK01000054_gene1466	NA	NA
UHGV-0182467_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0182467_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182467_11	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0182467_11	UniRef90	UniRef90_UPI0004130EC4	phage terminase large subunit	NA
UHGV-0182467_11	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-0182467_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0182467_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182467_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0182467_12	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0182467_12	Structural annotation	PF02796, TIGR02844	NA	NA
UHGV-0182467_14	UniRef90	UniRef90_A0A6I2R3T9	Protein phosphatase	NA
UHGV-0182467_15	PHROG	phrog_15863	NA	unknown function
UHGV-0182467_15	UniRef90	UniRef90_A0A498RA91	J domain-containing protein	NA
UHGV-0182467_15	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0182467_15	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0182467_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0182467_20	UniRef90	UniRef90_A0A832L5E4	Crossover junction endodeoxyribonuclease RuvC	NA
UHGV-0182467_20	eggNOG-mapper	1304885.AUEY01000070_gene1852	NA	NA
UHGV-0182467_20	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0182467_25	Pfam	PF04448	NA	DUF551
UHGV-0182467_25	Structural annotation	NF041588	NA	NA
UHGV-0182467_28	UniRef90	UniRef90_UPI00054386A4	nucleotide pyrophosphohydrolase	NA
UHGV-0182467_28	eggNOG-mapper	272562.CA_C1930	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0182467_28	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0182467_28	Structural annotation	COG1694	NA	NA
UHGV-0182467_29	PHROG	phrog_5070	NA	unknown function
UHGV-0182467_29	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0182467_29	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0182467_29	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0182467_29	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0182467_29	Structural annotation	NF040481	NA	NA
UHGV-0182467_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182467_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182467_30	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-0182467_30	eggNOG-mapper	1118054.CAGW01000038_gene940	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0182467_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182467_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182467_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182467_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182467_30	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0182467_31	PHROG	phrog_824	NA	unknown function
UHGV-0182467_31	UniRef90	UniRef90_UPI00189BCDD7	VRR-NUC domain-containing protein	NA
UHGV-0182467_31	eggNOG-mapper	1291050.JAGE01000001_gene480	VRR_NUC	NA
UHGV-0182467_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0182467_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0182467_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0182467_32	UniRef90	UniRef90_A0A3D0MPP5	Replicative DNA helicase	NA
UHGV-0182467_32	eggNOG-mapper	1321786.HMPREF1992_01477	Participates in initiation and elongation during chromosome replication	NA
UHGV-0182467_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0182467_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0182467_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0182467_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0182467_33	PHROG	phrog_15768	NA	unknown function
UHGV-0182467_33	UniRef90	UniRef90_UPI0019563B2C	NA	NA
UHGV-0182467_33	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0182467_33	Pfam	PF19808	NA	DUF6291
UHGV-0182467_33	Structural annotation	PF19808	NA	NA
UHGV-0182467_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182467_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182467_34	UniRef90	UniRef90_A0A1Q6Q4S4	Single-stranded DNA-binding protein	NA
UHGV-0182467_34	eggNOG-mapper	1340493.JNIF01000004_gene1155	single-stranded DNA binding	NA
UHGV-0182467_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182467_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182467_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182467_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182467_34	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0182467_35	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0182467_35	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0182467_35	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0182467_35	Pfam	PF06378	NA	DUF1071
UHGV-0182467_35	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0182467_38	Structural annotation	PF20800	NA	NA
UHGV-0182467_41	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0182467_42	KOfam	K05840	DRD5; dopamine receptor D5	NA
UHGV-0182467_42	PHROG	phrog_4433	NA	unknown function
UHGV-0182467_42	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0182467_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0182467_42	Structural annotation	NF007410	NA	NA
UHGV-0182467_43	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0182467_43	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0182467_46	UniRef90	UniRef90_UPI0006CFEDB7	helix-turn-helix transcriptional regulator	NA
UHGV-0182467_46	eggNOG-mapper	1232446.BAIE02000002_gene796	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0182467_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182467_46	Structural annotation	PF08667, MF_00535, NF010465, COG1396	NA	NA
UHGV-0182467_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0182467_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0182467_47	UniRef90	UniRef90_A0A385Q3I4	XRE family transcriptional regulator	NA
UHGV-0182467_47	eggNOG-mapper	1232446.BAIE02000002_gene795	NA	NA
UHGV-0182467_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0182467_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182467_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0182467_49	KOfam	K14059	int; integrase	NA
UHGV-0182467_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0182467_49	UniRef90	UniRef90_A0A353J242	Site-specific integrase	NA
UHGV-0182467_49	eggNOG-mapper	246199.CUS_5913	Phage integrase family	NA
UHGV-0182467_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182467_49	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182467_49	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0182467_50	Structural annotation	PF02255, TIGR00823	NA	NA