UHGV-0182771

Genome information

Genome length 36,535 bps

CDS count 67

Completeness 86.94% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182771
vOTU ID	vOTU-029325
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598230
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.9
Jumbo phage	No

Genome content
Genome length	36,535 bps
GC content	53.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	93.67%
Average CDS length	516.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182771_1	PHROG	phrog_21357	endolysin	lysis
UHGV-0182771_1	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0182771_1	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0182771_1	Pfam	PF05257	CHAP domain	CHAP
UHGV-0182771_1	COG	COG1388	LysM repeat	NA
UHGV-0182771_1	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0182771_2	PHROG	phrog_13256	NA	unknown function
UHGV-0182771_2	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0182771_3	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0182771_3	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0182771_4	PHROG	phrog_4105	NA	unknown function
UHGV-0182771_5	PHROG	phrog_18593	NA	unknown function
UHGV-0182771_5	UniRef90	UniRef90_UPI001EDF4BF9	chitinase	NA
UHGV-0182771_5	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0182771_5	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0182771_6	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0182771_6	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0182771_6	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0182771_6	Pfam	PF19789	NA	DUF6273
UHGV-0182771_6	Structural annotation	PF19789	NA	NA
UHGV-0182771_7	PHROG	phrog_18725	NA	unknown function
UHGV-0182771_7	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0182771_7	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0182771_8	KOfam	K01361	E3.4.21.96; lactocepin [EC:3.4.21.96]	NA
UHGV-0182771_8	PHROG	phrog_11157	NA	unknown function
UHGV-0182771_8	UniRef90	UniRef90_UPI001C10C6DC	Ig-like domain-containing protein	NA
UHGV-0182771_8	eggNOG-mapper	1256908.HMPREF0373_00674	NA	NA
UHGV-0182771_8	Pfam	PF17957	Bacterial Ig domain	Big_7
UHGV-0182771_8	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0182771_8	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0182771_8	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0182771_10	PHROG	phrog_13879	NA	unknown function
UHGV-0182771_10	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0182771_10	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0182771_11	PHROG	phrog_1194	NA	unknown function
UHGV-0182771_11	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0182771_11	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0182771_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0182771_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0182771_12	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0182771_12	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0182771_12	COG	COG1511	NA	NA
UHGV-0182771_13	PHROG	phrog_806	NA	unknown function
UHGV-0182771_13	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0182771_13	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0182771_13	Pfam	PF11611	NA	DUF4352
UHGV-0182771_13	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0182771_14	PHROG	phrog_706	NA	unknown function
UHGV-0182771_14	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0182771_14	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0182771_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0182771_14	Structural annotation	PF06854	NA	NA
UHGV-0182771_15	PHROG	phrog_11299	NA	unknown function
UHGV-0182771_15	eggNOG-mapper	1235797.C816_04185	NA	NA
UHGV-0182771_15	Structural annotation	PF10666	NA	NA
UHGV-0182771_16	PHROG	phrog_3099	NA	unknown function
UHGV-0182771_16	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0182771_16	Structural annotation	TIGR02126	NA	NA
UHGV-0182771_17	PHROG	phrog_3266	tail completion	connector
UHGV-0182771_17	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0182771_17	Structural annotation	PF12691	NA	NA
UHGV-0182771_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0182771_18	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0182771_18	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0182771_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0182771_18	Structural annotation	PF11114	NA	NA
UHGV-0182771_19	PHROG	phrog_3366	NA	unknown function
UHGV-0182771_19	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0182771_19	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0182771_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0182771_20	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0182771_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0182771_21	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0182771_21	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0182771_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0182771_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0182771_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0182771_21	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182771_22	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0182771_22	Structural annotation	PF06810	NA	NA
UHGV-0182771_23	Structural annotation	PF18152	NA	NA
UHGV-0182771_24	Structural annotation	PF07258, MF_01194, TIGR02097	NA	NA
UHGV-0182771_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0182771_25	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0182771_25	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0182771_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0182771_25	COG	COG2369	NA	NA
UHGV-0182771_25	Structural annotation	PF06152	NA	NA
UHGV-0182771_27	PHROG	phrog_8680	NA	unknown function
UHGV-0182771_27	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0182771_27	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0182771_27	Pfam	PF14386	NA	DUF4417
UHGV-0182771_27	Structural annotation	PF14386	NA	NA
UHGV-0182771_28	PHROG	phrog_9479	NA	unknown function
UHGV-0182771_28	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0182771_28	Structural annotation	PF15529	NA	NA
UHGV-0182771_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0182771_30	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0182771_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0182771_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0182771_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0182771_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182771_31	UniRef90	UniRef90_A0A3E2U4F6	AP2 domain-containing protein	NA
UHGV-0182771_31	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0182771_31	Structural annotation	PF00847	NA	NA
UHGV-0182771_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182771_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0182771_32	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0182771_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0182771_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0182771_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0182771_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0182771_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182771_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0182771_33	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0182771_33	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0182771_33	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0182771_33	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0182771_33	Structural annotation	PF16677	NA	NA
UHGV-0182771_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0182771_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0182771_34	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0182771_34	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0182771_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182771_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182771_34	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0182771_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0182771_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0182771_35	UniRef90	UniRef90_A0A1C6E5W1	Methyltransferase	NA
UHGV-0182771_35	eggNOG-mapper	910314.HMPREF9220_0636	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0182771_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0182771_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0182771_35	COG	COG0863	DNA modification methylase	NA
UHGV-0182771_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0182771_36	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0182771_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0182771_40	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0182771_40	UniRef90	UniRef90_UPI0005288167	NA	NA
UHGV-0182771_40	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0182771_40	Pfam	PF06356	NA	DUF1064
UHGV-0182771_40	Structural annotation	PF06356	NA	NA
UHGV-0182771_44	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0182771_46	Structural annotation	PF14354	NA	NA
UHGV-0182771_47	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0182771_47	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0182771_47	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0182771_48	PHROG	phrog_38832	NA	unknown function
UHGV-0182771_48	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0182771_48	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0182771_49	Pfam	PF04448	NA	DUF551
UHGV-0182771_50	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0182771_50	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0182771_50	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0182771_50	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0182771_50	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0182771_50	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0182771_50	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0182771_51	PHROG	phrog_15768	NA	unknown function
UHGV-0182771_51	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0182771_51	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-0182771_51	Pfam	PF19808	NA	DUF6291
UHGV-0182771_51	Structural annotation	PF19808	NA	NA
UHGV-0182771_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182771_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182771_53	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-0182771_53	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0182771_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182771_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182771_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182771_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182771_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0182771_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0182771_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0182771_54	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-0182771_54	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0182771_54	Pfam	PF03837	RecT family	RecT
UHGV-0182771_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0182771_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0182771_54	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0182771_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182771_55	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0182771_55	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0182771_55	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0182771_55	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0182771_55	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0182771_55	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0182771_57	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0182771_57	Structural annotation	PF21715, MF_01804, TIGR00281, COG1386	NA	NA
UHGV-0182771_58	PHROG	phrog_22529	NA	unknown function
UHGV-0182771_58	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0182771_58	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-0182771_58	Pfam	PF06725	3D domain	3D
UHGV-0182771_58	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0182771_58	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0182771_60	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0182771_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182771_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182771_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0182771_62	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-0182771_62	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0182771_66	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0182771_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182771_66	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0182771_66	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0182771_67	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0182771_67	PHROG	phrog_95	integrase	integration and excision
UHGV-0182771_67	UniRef90	UniRef90_UPI00068F78F7	recombinase family protein	NA
UHGV-0182771_67	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0182771_67	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0182771_67	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA