UHGV-0182918

Genome information

Genome length 78,931 bps

CDS count 116

Completeness 83.82% (medium-quality)

geNomad score 0.9120

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182918
vOTU ID	vOTU-029337
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597527
BioSample	SAMN09781773
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	83.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9120
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.89
Jumbo phage	No

Genome content
Genome length	78,931 bps
GC content	54.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	116
CDS density	91.31%
Average CDS length	623.85 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182918_5	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0182918_5	UniRef90	UniRef90_UPI00040D9D55	ERCC4 domain-containing protein	NA
UHGV-0182918_5	eggNOG-mapper	335543.Sfum_2504	ERCC4 domain	NA
UHGV-0182918_5	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0182918_5	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0182918_5	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0182918_6	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0182918_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0182918_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0182918_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0182918_16	KOfam	K02849	waaQ, rfaQ; heptosyltransferase III [EC:2.4.-.-]	NA
UHGV-0182918_16	UniRef90	UniRef90_A0A2J6MLP4	Autotransporter strand-loop-strand O-heptosyltransferase	NA
UHGV-0182918_16	eggNOG-mapper	640512.BC1003_5593	Glycosyltransferase family 9 (heptosyltransferase)	NA
UHGV-0182918_16	Pfam	PF21129	Glycosyltransferase TibC, N-terminal domain	TibC_1st
UHGV-0182918_16	Pfam	PF01075	Glycosyltransferase family 9 (heptosyltransferase)	Glyco_transf_9
UHGV-0182918_16	NCBIFam	TIGR04414.1	autotransporter strand-loop-strand O-heptosyltransferase	NA
UHGV-0182918_16	COG	COG0859	ADP-heptose:LPS heptosyltransferase	NA
UHGV-0182918_17	Structural annotation	PF21190, COG4935	NA	NA
UHGV-0182918_18	eggNOG-mapper	1121434.AULY01000011_gene1832	NA	NA
UHGV-0182918_18	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0182918_18	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0182918_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0182918_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0182918_21	UniRef90	UniRef90_A0A844G9E4	3'-5' exonuclease	NA
UHGV-0182918_21	eggNOG-mapper	883156.HMPREF9282_01014	DNA helicase	NA
UHGV-0182918_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0182918_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0182918_21	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-0182918_21	Structural annotation	PF00929, MF_00157, NF006316, COG0847	NA	NA
UHGV-0182918_22	PHROG	phrog_145	portal protein	head and packaging
UHGV-0182918_22	UniRef90	UniRef90_A0A8G0QN97	Portal protein	NA
UHGV-0182918_22	eggNOG-mapper	1217710.F969_02538	NA	NA
UHGV-0182918_22	Pfam	PF13264	NA	DUF4055
UHGV-0182918_23	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0182918_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0182918_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0182918_23	COG	COG2369	NA	NA
UHGV-0182918_23	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0182918_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0182918_24	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0182918_24	UniRef90	UniRef90_A0A1V6HDF2	Terminase-like family protein	NA
UHGV-0182918_24	eggNOG-mapper	1000565.METUNv1_01696	Terminase-like family	NA
UHGV-0182918_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0182918_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0182918_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0182918_26	KOfam	K14059	int; integrase	NA
UHGV-0182918_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0182918_26	UniRef90	UniRef90_A0A848AWZ2	Tyrosine-type recombinase/integrase	NA
UHGV-0182918_26	eggNOG-mapper	313628.LNTAR_25355	DNA integration	NA
UHGV-0182918_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182918_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182918_27	KOfam	K11089	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	NA
UHGV-0182918_27	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182918_27	UniRef90	UniRef90_A0A842WU16	TROVE domain-containing protein	NA
UHGV-0182918_27	eggNOG-mapper	1284352.AOIG01000012_gene1461	TROVE domain	NA
UHGV-0182918_27	COG	COG2425	NA	NA
UHGV-0182918_28	KOfam	K07074	NA	NA
UHGV-0182918_28	PHROG	phrog_388	nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0182918_28	UniRef90	UniRef90_A0A0G2SSM1	Thioredoxin	NA
UHGV-0182918_28	eggNOG-mapper	115991.K0NVU0_9CAUD	Predicted nucleotidyltransferase	NA
UHGV-0182918_28	Pfam	PF10127	RNA repair pathway DNA polymerase beta family	RlaP
UHGV-0182918_28	Structural annotation	PF10127, NF000079, COG3541	NA	NA
UHGV-0182918_31	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0182918_31	UniRef90	UniRef90_UPI000E4781A9	radical SAM protein	NA
UHGV-0182918_31	eggNOG-mapper	762968.HMPREF9441_00539	radical SAM domain protein	NA
UHGV-0182918_31	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0182918_31	Structural annotation	MF_01865, TIGR00089, COG0621	NA	NA
UHGV-0182918_38	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0182918_38	UniRef90	UniRef90_A0A1V5KAU2	DarA_C domain-containing protein	NA
UHGV-0182918_38	eggNOG-mapper	1226322.HMPREF1545_03514	NA	NA
UHGV-0182918_38	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0182918_40	eggNOG-mapper	435591.BDI_3865	NA	NA
UHGV-0182918_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0182918_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0182918_54	eggNOG-mapper	1444309.JAQG01000040_gene4541	Belongs to the 'phage' integrase family	NA
UHGV-0182918_54	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0182918_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182918_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0182918_56	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0182918_56	PHROG	phrog_15286	NA	unknown function
UHGV-0182918_56	UniRef90	UniRef90_A0A7W5H233	Bro-N domain-containing protein	NA
UHGV-0182918_56	eggNOG-mapper	742738.HMPREF9460_02889	BRO family, N-terminal domain	NA
UHGV-0182918_56	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0182918_56	COG	COG3617	Prophage antirepressor	NA
UHGV-0182918_56	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0182918_57	NCBIFam	TIGR01643.1	YD repeat-containing protein	NA
UHGV-0182918_58	KOfam	K01174	nuc; micrococcal nuclease [EC:3.1.31.1]	NA
UHGV-0182918_58	PHROG	phrog_8809	NA	unknown function
UHGV-0182918_58	UniRef90	UniRef90_A0A848AXR3	Thermonuclease family protein	NA
UHGV-0182918_58	eggNOG-mapper	265072.Mfla_1147	Staphylococcal nuclease homologues	NA
UHGV-0182918_58	Pfam	PF00565	Staphylococcal nuclease homologue	SNase
UHGV-0182918_58	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0182918_59	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0182918_59	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0182918_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0182918_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0182918_62	UniRef90	UniRef90_A0A1G0YXN3	Single-stranded DNA-binding protein	NA
UHGV-0182918_62	eggNOG-mapper	452637.Oter_2288	Single-stranded DNA-binding protein	NA
UHGV-0182918_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0182918_62	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0182918_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0182918_62	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0182918_62	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0182918_63	PHROG	phrog_6721	NA	unknown function
UHGV-0182918_63	eggNOG-mapper	1319815.HMPREF0202_02988	NA	NA
UHGV-0182918_63	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-0182918_66	Structural annotation	PF08271	NA	NA
UHGV-0182918_72	Pfam	PF09643	YopX protein	YopX
UHGV-0182918_74	PHROG	phrog_98	NA	unknown function
UHGV-0182918_74	UniRef90	UniRef90_A0A843GUN3	YopX domain-containing protein	NA
UHGV-0182918_74	eggNOG-mapper	1220589.CD32_00505	YopX protein	NA
UHGV-0182918_74	Pfam	PF09643	YopX protein	YopX
UHGV-0182918_74	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0182918_74	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0182918_76	eggNOG-mapper	261292.Nit79A3_1380	NA	NA
UHGV-0182918_77	KOfam	K06941	rlmN; 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]	NA
UHGV-0182918_77	PHROG	phrog_24834	NA	unknown function
UHGV-0182918_77	UniRef90	UniRef90_A0A6N2TLA9	Dual-specificity RNA methyltransferase RlmN	NA
UHGV-0182918_77	eggNOG-mapper	449673.BACSTE_02201	rRNA (adenine-C2-)-methyltransferase activity	NA
UHGV-0182918_77	COG	COG0820	Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37	NA
UHGV-0182918_77	Structural annotation	MF_01849, TIGR00048, COG0820	NA	NA
UHGV-0182918_81	PHROG	phrog_6245	NA	unknown function
UHGV-0182918_81	UniRef90	UniRef90_A0A2S1ACL3	MFS transporter	NA
UHGV-0182918_81	eggNOG-mapper	1123288.SOV_2c03780	NA	NA
UHGV-0182918_85	PHROG	phrog_874	NA	unknown function
UHGV-0182918_85	UniRef90	UniRef90_UPI00191667AB	morphogenetic protein	NA
UHGV-0182918_85	eggNOG-mapper	1197719.A464_976	NA	NA
UHGV-0182918_85	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0182918_87	PHROG	phrog_2045	NA	unknown function
UHGV-0182918_87	UniRef90	UniRef90_A0A3A4Y5D8	NA	NA
UHGV-0182918_87	eggNOG-mapper	261292.Nit79A3_1423	PFAM Gp37Gp68 family protein	NA
UHGV-0182918_87	Pfam	PF07505	NA	DUF5131
UHGV-0182918_87	COG	COG4422	NA	NA
UHGV-0182918_87	Structural annotation	PF07505, TIGR04471, COG4422	NA	NA
UHGV-0182918_88	Structural annotation	PF08271	NA	NA
UHGV-0182918_89	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0182918_89	UniRef90	UniRef90_A0A842ASI8	Class I SAM-dependent methyltransferase	NA
UHGV-0182918_89	eggNOG-mapper	1395513.P343_12775	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0182918_89	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0182918_89	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0182918_89	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0182918_89	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0182918_91	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0182918_91	eggNOG-mapper	398578.Daci_3457	sulfate reduction	NA
UHGV-0182918_91	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0182918_91	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0182918_92	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0182918_92	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0182918_92	UniRef90	UniRef90_A0A1G0XSE8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0182918_92	eggNOG-mapper	472175.EL18_01389	C-5 cytosine-specific DNA methylase	NA
UHGV-0182918_92	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0182918_92	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0182918_92	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0182918_92	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-0182918_93	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0182918_93	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0182918_93	UniRef90	UniRef90_A0A359MVR7	Methyltransferase	NA
UHGV-0182918_93	eggNOG-mapper	1166018.FAES_1810	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0182918_93	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-0182918_93	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0182918_93	COG	COG0863	DNA modification methylase	NA
UHGV-0182918_93	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0182918_94	PHROG	phrog_11908	NA	unknown function
UHGV-0182918_94	UniRef90	UniRef90_A0A2H5BHB2	PHB domain-containing protein	NA
UHGV-0182918_94	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0182918_94	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0182918_94	Structural annotation	PF01145, NF008259, COG0330	NA	NA
UHGV-0182918_96	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0182918_96	PHROG	phrog_3277	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0182918_96	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0182918_96	COG	COG0666	Ankyrin repeat	NA
UHGV-0182918_97	UniRef90	UniRef90_UPI001E493A98	NA	NA
UHGV-0182918_98	KOfam	K03554	rdgC; recombination associated protein RdgC	NA
UHGV-0182918_98	PHROG	phrog_724	exonuclease recombination-associated	DNA, RNA and nucleotide metabolism
UHGV-0182918_98	UniRef90	UniRef90_A0A1G0YXQ9	Recombination-associated protein RdgC	NA
UHGV-0182918_98	eggNOG-mapper	313628.LNTAR_19802	May be involved in recombination	NA
UHGV-0182918_98	Pfam	PF04381	Putative exonuclease, RdgC	RdgC
UHGV-0182918_98	COG	COG2974	DNA recombination-dependent growth factor RdgC	NA
UHGV-0182918_100	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0182918_100	Pfam	PF10926	NA	DUF2800
UHGV-0182918_100	COG	COG2887	RecB family exonuclease	NA
UHGV-0182918_101	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0182918_101	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0182918_101	UniRef90	UniRef90_A0A843HTF5	Recombinase RecT	NA
UHGV-0182918_101	eggNOG-mapper	570952.ATVH01000011_gene390	RecT family	NA
UHGV-0182918_101	Pfam	PF03837	RecT family	RecT
UHGV-0182918_101	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0182918_101	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0182918_101	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0182918_103	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0182918_103	PHROG	phrog_1499	NA	unknown function
UHGV-0182918_103	UniRef90	UniRef90_A0A316PZR1	Chromosome segregation protein SMC	NA
UHGV-0182918_103	eggNOG-mapper	883114.HMPREF9709_01215	domain protein	NA
UHGV-0182918_103	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0182918_103	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0182918_107	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0182918_107	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0182918_107	UniRef90	UniRef90_UPI000689E462	antA/AntB antirepressor family protein	NA
UHGV-0182918_107	eggNOG-mapper	32024.JMTI01000003_gene1710	AntA/AntB antirepressor	NA
UHGV-0182918_107	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0182918_107	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0182918_107	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0182918_109	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0182918_109	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182918_109	UniRef90	UniRef90_A0A848AYD6	Peptidase_S24 domain-containing protein	NA
UHGV-0182918_109	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0182918_109	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0182918_111	KOfam	K14059	int; integrase	NA
UHGV-0182918_111	PHROG	phrog_1	integrase	integration and excision
UHGV-0182918_111	UniRef90	UniRef90_A0A2W4K2T5	Recombinase XerD	NA
UHGV-0182918_111	eggNOG-mapper	261292.Nit79A3_3369	Belongs to the 'phage' integrase family	NA
UHGV-0182918_111	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0182918_111	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0182918_111	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0182918_111	Structural annotation	PF00589, MF_01807, NF001399, COG4974	NA	NA
UHGV-0182918_112	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0182918_112	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0182918_112	UniRef90	UniRef90_A0A2S0KRQ3	SF3 helicase domain-containing protein	NA
UHGV-0182918_112	eggNOG-mapper	595536.ADVE02000001_gene2388	Phage plasmid primase P4 family	NA
UHGV-0182918_112	Pfam	PF19263	NA	DUF5906
UHGV-0182918_112	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0182918_116	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0182918_116	UniRef90	UniRef90_A0A2S0KRT5	Sigma70_r2 domain-containing protein	NA
UHGV-0182918_116	eggNOG-mapper	313628.LNTAR_10171	DNA-templated transcription, initiation	NA
UHGV-0182918_116	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0182918_116	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA