UHGV-0182981

Genome information

Genome length 19,739 bps

CDS count 38

Completeness 53.64% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0182981
vOTU ID	vOTU-029340
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596931
BioSample	SAMN09781785
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.89
Jumbo phage	No

Genome content
Genome length	19,739 bps
GC content	41.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.94%
Average CDS length	470.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0182981_1	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0182981_1	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0182981_1	UniRef90	UniRef90_UPI00156DC26F	Clp protease ClpP	NA
UHGV-0182981_1	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0182981_1	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0182981_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0182981_1	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0182981_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-0182981_2	UniRef90	UniRef90_UPI00156EE6C1	phage portal protein	NA
UHGV-0182981_2	eggNOG-mapper	1220589.CD32_01735	portal protein	NA
UHGV-0182981_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0182981_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0182981_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0182981_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0182981_3	UniRef90	UniRef90_UPI00156EA6D8	terminase large subunit	NA
UHGV-0182981_3	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0182981_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0182981_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0182981_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0182981_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0182981_4	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0182981_4	UniRef90	UniRef90_UPI00156D89BA	P27 family phage terminase small subunit	NA
UHGV-0182981_4	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0182981_4	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0182981_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0182981_7	PHROG	phrog_11237	NA	unknown function
UHGV-0182981_7	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0182981_8	PHROG	phrog_6568	NA	unknown function
UHGV-0182981_10	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0182981_10	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0182981_10	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0182981_10	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0182981_10	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0182981_10	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0182981_10	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0182981_13	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-0182981_14	PHROG	phrog_7566	NA	unknown function
UHGV-0182981_14	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0182981_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0182981_16	PHROG	phrog_15982	NA	unknown function
UHGV-0182981_16	UniRef90	UniRef90_UPI0015702B3C	ParB/RepB/Spo0J family partition protein	NA
UHGV-0182981_16	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0182981_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0182981_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0182981_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0182981_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0182981_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0182981_18	UniRef90	UniRef90_UPI00156DD98C	ParA family protein	NA
UHGV-0182981_18	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0182981_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0182981_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0182981_18	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0182981_19	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0182981_20	PHROG	phrog_824	NA	unknown function
UHGV-0182981_20	UniRef90	UniRef90_UPI0015713852	VRR-NUC domain-containing protein	NA
UHGV-0182981_20	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0182981_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0182981_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0182981_22	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0182981_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0182981_25	Structural annotation	PF14282	NA	NA
UHGV-0182981_26	PHROG	phrog_23707	NA	unknown function
UHGV-0182981_26	UniRef90	UniRef90_UPI00156F2BF7	alanine racemase	NA
UHGV-0182981_26	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0182981_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0182981_27	UniRef90	UniRef90_UPI00156DCAF3	Lar family restriction alleviation protein	NA
UHGV-0182981_27	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0182981_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0182981_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0182981_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0182981_27	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0182981_28	PHROG	phrog_32168	NA	unknown function
UHGV-0182981_28	UniRef90	UniRef90_UPI0015707E77	zinc ribbon domain-containing protein	NA
UHGV-0182981_32	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0182981_34	UniRef90	UniRef90_UPI00156E0088	helix-turn-helix domain-containing protein	NA
UHGV-0182981_34	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0182981_34	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0182981_36	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0182981_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0182981_36	UniRef90	UniRef90_UPI0015714871	helix-turn-helix domain-containing protein	NA
UHGV-0182981_36	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0182981_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0182981_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0182981_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0182981_38	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0182981_38	UniRef90	UniRef90_UPI00157039CB	Abi family protein	NA
UHGV-0182981_38	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0182981_38	PADLOC	AbiD	AbiD	Abi
UHGV-0182981_38	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0182981_38	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0182981_38	Structural annotation	PF07751, COG4823	NA	NA