UHGV-0183159

Genome information

Genome length 37,100 bps

CDS count 49

Completeness 95.69% (high-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183159
vOTU ID	vOTU-011092
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA1906527_b1_ct95_vs2@Siphoviridae__sp._ctj4U95@linear
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.58
Jumbo phage	No

Genome content
Genome length	37,100 bps
GC content	38.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.39%
Average CDS length	716.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183159_1	PHROG	phrog_14959	NA	unknown function
UHGV-0183159_1	UniRef90	UniRef90_A0A1M6RLC1	Surface protein (Fragment)	NA
UHGV-0183159_1	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0183159_1	Pfam	PF12799	Leucine Rich repeats (2 copies)	LRR_4
UHGV-0183159_1	Pfam	PF03382	NA	DUF285
UHGV-0183159_1	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0183159_2	PHROG	phrog_14959	NA	unknown function
UHGV-0183159_2	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0183159_5	PHROG	phrog_6616	tail protein	tail
UHGV-0183159_5	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0183159_5	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0183159_5	COG	COG4926	Phage-related protein	NA
UHGV-0183159_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0183159_6	PHROG	phrog_1194	NA	unknown function
UHGV-0183159_6	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0183159_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0183159_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0183159_7	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0183159_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0183159_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0183159_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0183159_8	PHROG	phrog_8355	NA	unknown function
UHGV-0183159_8	UniRef90	UniRef90_UPI000E439FD7	Gp15 family bacteriophage protein	NA
UHGV-0183159_8	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0183159_9	PHROG	phrog_8300	NA	unknown function
UHGV-0183159_9	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0183159_9	Structural annotation	PF06854	NA	NA
UHGV-0183159_10	PHROG	phrog_820	major tail protein	tail
UHGV-0183159_10	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0183159_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0183159_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0183159_11	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0183159_11	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0183159_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0183159_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0183159_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0183159_12	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0183159_13	PHROG	phrog_8710	NA	unknown function
UHGV-0183159_13	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0183159_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0183159_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0183159_14	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0183159_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0183159_15	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-0183159_15	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0183159_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0183159_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0183159_16	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0183159_17	PHROG	phrog_13199	NA	unknown function
UHGV-0183159_17	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0183159_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0183159_19	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0183159_19	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0183159_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0183159_19	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0183159_19	Structural annotation	PF06152	NA	NA
UHGV-0183159_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0183159_20	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0183159_20	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0183159_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0183159_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0183159_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0183159_21	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0183159_21	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0183159_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0183159_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0183159_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0183159_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0183159_22	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-0183159_22	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0183159_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0183159_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0183159_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0183159_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183159_23	UniRef90	UniRef90_UPI001C0ED9E5	NA	NA
UHGV-0183159_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0183159_24	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0183159_25	PHROG	phrog_25754	NA	unknown function
UHGV-0183159_25	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0183159_25	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0183159_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0183159_26	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0183159_26	UniRef90	UniRef90_A0A0E2HLA7	Methyltransferase	NA
UHGV-0183159_26	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0183159_26	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0183159_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0183159_26	COG	COG0863	DNA modification methylase	NA
UHGV-0183159_26	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0183159_29	PHROG	phrog_11769	NA	unknown function
UHGV-0183159_29	UniRef90	UniRef90_UPI001177D7CA	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0183159_29	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0183159_29	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0183159_29	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0183159_29	Structural annotation	PF09681, PF07261, TIGR01714, COG3935	NA	NA
UHGV-0183159_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183159_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183159_30	UniRef90	UniRef90_A0A7X2P517	Single-stranded DNA-binding protein	NA
UHGV-0183159_30	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0183159_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183159_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183159_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183159_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183159_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0183159_31	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183159_31	UniRef90	UniRef90_A0A373IL66	Single-stranded DNA-binding protein	NA
UHGV-0183159_31	eggNOG-mapper	33035.JPJF01000122_gene2463	ERF superfamily	NA
UHGV-0183159_31	Pfam	PF04404	ERF superfamily	ERF
UHGV-0183159_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183159_31	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0183159_32	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0183159_32	UniRef90	UniRef90_UPI00051BA35F	siphovirus Gp157 family protein	NA
UHGV-0183159_32	eggNOG-mapper	33035.JPJF01000122_gene2464	Siphovirus Gp157	NA
UHGV-0183159_32	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0183159_32	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0183159_36	PHROG	phrog_6058	NA	unknown function
UHGV-0183159_36	UniRef90	UniRef90_A0A2V1JQ38	Glycogen synthase	NA
UHGV-0183159_36	eggNOG-mapper	428125.CLOLEP_01347	NA	NA
UHGV-0183159_36	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0183159_37	PHROG	phrog_5070	NA	unknown function
UHGV-0183159_37	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0183159_37	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0183159_37	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0183159_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0183159_38	UniRef90	UniRef90_A0A373ILI2	Phage repressor protein	NA
UHGV-0183159_38	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0183159_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0183159_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0183159_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0183159_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0183159_39	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0183159_39	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0183159_39	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0183159_39	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0183159_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0183159_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0183159_40	UniRef90	UniRef90_UPI0012427CCE	phage antirepressor	NA
UHGV-0183159_40	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0183159_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0183159_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0183159_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0183159_40	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0183159_41	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-0183159_41	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0183159_41	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0183159_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0183159_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183159_42	UniRef90	UniRef90_A0A373INN4	XRE family transcriptional regulator	NA
UHGV-0183159_42	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183159_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183159_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183159_42	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183159_43	PHROG	phrog_87	metallo-protease	other
UHGV-0183159_43	UniRef90	UniRef90_A0A373INP4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0183159_43	eggNOG-mapper	1121115.AXVN01000006_gene2176	NA	NA
UHGV-0183159_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0183159_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0183159_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0183159_44	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0183159_44	UniRef90	UniRef90_UPI001D068087	Ltp family lipoprotein	NA
UHGV-0183159_44	eggNOG-mapper	196164.23492145	Host cell surface-exposed lipoprotein	NA
UHGV-0183159_44	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0183159_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0183159_44	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0183159_45	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0183159_45	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183159_45	UniRef90	UniRef90_A0A417D3V0	Type I site-specific deoxyribonuclease	NA
UHGV-0183159_45	eggNOG-mapper	1235802.C823_05685	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0183159_45	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0183159_45	COG	COG4748	NA	NA
UHGV-0183159_46	PHROG	phrog_27136	NA	unknown function
UHGV-0183159_46	UniRef90	UniRef90_UPI000A966D6C	Zn-ribbon domain-containing protein	NA
UHGV-0183159_46	eggNOG-mapper	1282664.H354_06486	Short C-terminal domain	NA
UHGV-0183159_47	KOfam	K14059	int; integrase	NA
UHGV-0183159_47	PHROG	phrog_1	integrase	integration and excision
UHGV-0183159_47	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0183159_47	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0183159_47	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0183159_47	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183159_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0183159_47	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0183159_49	KOfam	K12410	npdA; NAD-dependent deacetylase [EC:2.3.1.286]	NA
UHGV-0183159_49	PHROG	phrog_2162	Sir2 (NAD-dependent deacetylase)	DNA, RNA and nucleotide metabolism
UHGV-0183159_49	UniRef90	UniRef90_R6VGK2	Deacetylase sirtuin-type domain-containing protein	NA
UHGV-0183159_49	eggNOG-mapper	33035.JPJF01000080_gene154	Sir2 family	NA
UHGV-0183159_49	Pfam	PF02146	Sir2 family	SIR2
UHGV-0183159_49	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0183159_49	Structural annotation	PF02146, MF_01968, NF001752, COG0846	NA	NA