UHGV-0183249

Genome information

Genome length 54,060 bps

CDS count 87

Completeness 97.50% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183249
vOTU ID	vOTU-062923
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597321
BioSample	SAMN09781764
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.06
Jumbo phage	No

Genome content
Genome length	54,060 bps
GC content	47.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	87
CDS density	92.56%
Average CDS length	580.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183249_3	PHROG	phrog_4105	NA	unknown function
UHGV-0183249_4	PHROG	phrog_13256	NA	unknown function
UHGV-0183249_4	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0183249_5	PHROG	phrog_1048	NA	unknown function
UHGV-0183249_5	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-0183249_5	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0183249_5	Pfam	PF11195	NA	DUF2829
UHGV-0183249_5	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0183249_5	Structural annotation	PF11195	NA	NA
UHGV-0183249_6	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0183249_6	PHROG	phrog_894	endolysin	lysis
UHGV-0183249_6	UniRef90	UniRef90_A0A088FWP5	Putative M15 family peptidase	NA
UHGV-0183249_6	eggNOG-mapper	1542498.A0A088FWP5_9CAUD	Peptidase M15	NA
UHGV-0183249_6	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0183249_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0183249_6	Structural annotation	PF05951, PF01471, COG3108	NA	NA
UHGV-0183249_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183249_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0183249_7	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0183249_8	PHROG	phrog_21718	NA	unknown function
UHGV-0183249_8	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0183249_10	PHROG	phrog_16490	NA	unknown function
UHGV-0183249_10	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0183249_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183249_12	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0183249_13	PHROG	phrog_10678	NA	unknown function
UHGV-0183249_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0183249_14	PHROG	phrog_95	integrase	integration and excision
UHGV-0183249_14	UniRef90	UniRef90_A0A137SPP0	Resolvase protein	NA
UHGV-0183249_14	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0183249_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0183249_14	Pfam	PF07508	Recombinase	Recombinase
UHGV-0183249_14	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0183249_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0183249_14	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0183249_15	UniRef90	UniRef90_UPI001C119CBB	copper amine oxidase N-terminal domain-containing protein	NA
UHGV-0183249_15	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0183249_15	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0183249_15	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0183249_15	Structural annotation	PF02883, MF_00791, NF003967, COG2967	NA	NA
UHGV-0183249_16	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0183249_16	UniRef90	UniRef90_UPI001F213CDA	helix-turn-helix transcriptional regulator	NA
UHGV-0183249_16	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0183249_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183249_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0183249_16	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0183249_17	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0183249_17	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0183249_17	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0183249_17	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0183249_17	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0183249_18	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0183249_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183249_18	UniRef90	UniRef90_UPI0019589E5A	helix-turn-helix domain-containing protein	NA
UHGV-0183249_18	eggNOG-mapper	1232452.BAIB02000003_gene385	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183249_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183249_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0183249_18	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0183249_19	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0183249_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0183249_19	UniRef90	UniRef90_A0A8I1VE17	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0183249_19	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0183249_19	Pfam	PF17284	Spermidine synthase tetramerisation domain	Spermine_synt_N
UHGV-0183249_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0183249_19	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0183249_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0183249_22	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0183249_22	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183249_22	UniRef90	UniRef90_A0A7X5DXX3	NA	NA
UHGV-0183249_22	eggNOG-mapper	1408437.JNJN01000081_gene1518	NA	NA
UHGV-0183249_22	Pfam	PF10926	NA	DUF2800
UHGV-0183249_22	COG	COG2887	RecB family exonuclease	NA
UHGV-0183249_22	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0183249_23	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183249_23	UniRef90	UniRef90_A0A6L5T7A8	NA	NA
UHGV-0183249_23	eggNOG-mapper	1408437.JNJN01000081_gene1517	NA	NA
UHGV-0183249_23	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0183249_23	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0183249_24	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0183249_24	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0183249_24	UniRef90	UniRef90_A0A413FZB0	POLAc domain-containing protein	NA
UHGV-0183249_24	eggNOG-mapper	1408437.JNJN01000045_gene604	DNA polymerase	NA
UHGV-0183249_24	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0183249_24	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0183249_24	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0183249_26	PHROG	phrog_6802	NA	unknown function
UHGV-0183249_26	eggNOG-mapper	691965.D4P7H4_9CAUD	NA	NA
UHGV-0183249_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0183249_29	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0183249_29	UniRef90	UniRef90_A0A374LFM3	Methyltransferase	NA
UHGV-0183249_29	eggNOG-mapper	397291.C804_00951	DNA methylase	NA
UHGV-0183249_29	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0183249_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0183249_29	COG	COG0863	DNA modification methylase	NA
UHGV-0183249_29	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0183249_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0183249_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0183249_30	UniRef90	UniRef90_A0A178T492	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0183249_30	eggNOG-mapper	224308.BSU20250	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0183249_30	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0183249_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0183249_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183249_30	Structural annotation	PF02390, COG2242	NA	NA
UHGV-0183249_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183249_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183249_33	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0183249_33	UniRef90	UniRef90_UPI00135EDE1E	DNA cytosine methyltransferase	NA
UHGV-0183249_33	eggNOG-mapper	1005704.HMPREF9968_0314	C-5 cytosine-specific DNA methylase	NA
UHGV-0183249_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183249_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0183249_34	UniRef90	UniRef90_UPI0012BCFC8B	DNA cytosine methyltransferase	NA
UHGV-0183249_34	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-0183249_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0183249_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183249_35	UniRef90	UniRef90_UPI001D005DC4	NA	NA
UHGV-0183249_35	eggNOG-mapper	1408423.JHYA01000001_gene947	NA	NA
UHGV-0183249_35	Pfam	PF07866	NA	DUF1653
UHGV-0183249_35	COG	COG4728	NA	NA
UHGV-0183249_35	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0183249_36	Structural annotation	PF13876	NA	NA
UHGV-0183249_37	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0183249_37	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0183249_41	PHROG	phrog_6072	NA	unknown function
UHGV-0183249_43	Structural annotation	PF10400, TIGR02501	NA	NA
UHGV-0183249_44	PHROG	phrog_25754	NA	unknown function
UHGV-0183249_44	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-0183249_44	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-0183249_50	PHROG	phrog_6721	NA	unknown function
UHGV-0183249_50	eggNOG-mapper	742740.HMPREF9474_02288	NA	NA
UHGV-0183249_50	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0183249_52	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0183249_52	UniRef90	UniRef90_A0A1C0AG46	Nucleotide pyrophosphohydrolase	NA
UHGV-0183249_52	eggNOG-mapper	411473.RUMCAL_00277	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0183249_52	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0183249_52	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0183249_52	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0183249_55	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0183249_55	UniRef90	UniRef90_A0A1L8I7B7	Virulence-associated protein E	NA
UHGV-0183249_55	eggNOG-mapper	1120971.AUCA01000043_gene1172	Virulence-associated protein E	NA
UHGV-0183249_55	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0183249_55	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0183249_55	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0183249_57	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183249_57	UniRef90	UniRef90_UPI00129CF143	VRR-NUC domain-containing protein	NA
UHGV-0183249_57	eggNOG-mapper	526218.Sterm_1414	VRR_NUC	NA
UHGV-0183249_58	KOfam	K10875	RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]	NA
UHGV-0183249_58	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0183249_58	UniRef90	UniRef90_G9XHJ3	Protein, SNF2 family	NA
UHGV-0183249_58	eggNOG-mapper	693746.OBV_01800	snf2 family	NA
UHGV-0183249_58	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0183249_58	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0183249_58	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0183249_58	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0183249_60	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0183249_60	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0183249_60	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0183249_60	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0183249_66	eggNOG-mapper	1095770.CAHE01000085_gene1290	NA	NA
UHGV-0183249_69	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0183249_69	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0183249_69	UniRef90	UniRef90_A0A174J919	DNA-invertase hin	NA
UHGV-0183249_69	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0183249_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0183249_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0183249_69	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0183249_70	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0183249_70	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0183249_70	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0183249_70	Pfam	PF05204	Homing endonuclease	Hom_end
UHGV-0183249_70	COG	COG5410	NA	NA
UHGV-0183249_70	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0183249_71	PHROG	phrog_64	portal protein	head and packaging
UHGV-0183249_71	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0183249_71	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0183249_71	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0183249_71	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0183249_72	UniRef90	UniRef90_UPI00189AAC90	NA	NA
UHGV-0183249_72	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0183249_72	Structural annotation	PF14265	NA	NA
UHGV-0183249_73	PHROG	phrog_909	major head protein	head and packaging
UHGV-0183249_73	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0183249_74	PHROG	phrog_29	major head protein	head and packaging
UHGV-0183249_74	UniRef90	UniRef90_A0A374HKR5	Phage capsid protein	NA
UHGV-0183249_74	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0183249_74	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0183249_74	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0183249_75	UniRef90	UniRef90_A0A374HKI7	DNA-packaging protein	NA
UHGV-0183249_75	eggNOG-mapper	996306.SSUR61_0983	NA	NA
UHGV-0183249_75	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0183249_75	Structural annotation	TIGR01560	NA	NA
UHGV-0183249_76	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0183249_77	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0183249_78	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0183249_79	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0183249_79	eggNOG-mapper	1140002.I570_01436	Phage tail tube protein, TTP	NA
UHGV-0183249_79	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0183249_80	UniRef90	UniRef90_A0A847W2H3	NA	NA
UHGV-0183249_80	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0183249_80	Pfam	PF16478	NA	DUF5055
UHGV-0183249_80	Structural annotation	PF16478	NA	NA
UHGV-0183249_81	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0183249_82	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0183249_82	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0183249_82	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0183249_83	PHROG	phrog_1194	NA	unknown function
UHGV-0183249_83	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0183249_83	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0183249_84	PHROG	phrog_13879	NA	unknown function
UHGV-0183249_84	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0183249_85	PHROG	phrog_18725	NA	unknown function
UHGV-0183249_85	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA