UHGV-0183302

Genome information

Genome length 43,382 bps

CDS count 50

Completeness 75.08% (medium-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183302
vOTU ID	vOTU-028728
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_597172
BioSample	SAMN09781764
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.6
Jumbo phage	No

Genome content
Genome length	43,382 bps
GC content	43.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.01%
Average CDS length	800.46 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183302_1	PHROG	phrog_6969	NA	unknown function
UHGV-0183302_1	UniRef90	UniRef90_UPI000E4B3C45	helix-turn-helix domain-containing protein	NA
UHGV-0183302_1	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0183302_1	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0183302_3	PHROG	phrog_18107	NA	unknown function
UHGV-0183302_3	UniRef90	UniRef90_A0A412CGY7	NA	NA
UHGV-0183302_3	eggNOG-mapper	1449050.JNLE01000003_gene3912	NA	NA
UHGV-0183302_3	Structural annotation	PF05037	NA	NA
UHGV-0183302_4	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183302_4	UniRef90	UniRef90_R6SKG3	AAA domain-containing protein	NA
UHGV-0183302_4	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0183302_4	Pfam	PF13479	AAA domain	AAA_24
UHGV-0183302_4	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0183302_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0183302_5	UniRef90	UniRef90_C7GC36	Siphovirus Gp157	NA
UHGV-0183302_5	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0183302_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0183302_5	Structural annotation	PF05565	NA	NA
UHGV-0183302_15	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0183302_15	UniRef90	UniRef90_UPI0012B58364	Arc family DNA-binding protein	NA
UHGV-0183302_15	Structural annotation	PF03869, NF041793, COG4877	NA	NA
UHGV-0183302_16	UniRef90	UniRef90_A0A354I2Z5	Arc domain-containing protein	NA
UHGV-0183302_16	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-0183302_16	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0183302_17	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0183302_17	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0183302_17	UniRef90	UniRef90_A0A290QIF2	XRE family transcriptional regulator	NA
UHGV-0183302_17	eggNOG-mapper	491915.Aflv_0639	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183302_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183302_17	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0183302_17	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0183302_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183302_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183302_18	UniRef90	UniRef90_A0A6N7W6K0	Helix-turn-helix domain-containing protein	NA
UHGV-0183302_18	eggNOG-mapper	435842.HMPREF0848_00306	sequence-specific DNA binding	NA
UHGV-0183302_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0183302_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183302_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183302_18	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183302_19	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0183302_20	PHROG	phrog_26484	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183302_20	UniRef90	UniRef90_C6JN48	PC4 domain-containing protein	NA
UHGV-0183302_20	eggNOG-mapper	469618.FVAG_00192	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0183302_20	COG	COG4443	NA	NA
UHGV-0183302_20	Structural annotation	COG4443	NA	NA
UHGV-0183302_21	eggNOG-mapper	1122216.AUHW01000007_gene1473	nuclease	NA
UHGV-0183302_21	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0183302_22	KOfam	K14059	int; integrase	NA
UHGV-0183302_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0183302_22	UniRef90	UniRef90_A0A7X6VHR6	Site-specific integrase	NA
UHGV-0183302_22	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0183302_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0183302_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183302_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0183302_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0183302_23	PHROG	phrog_14770	NA	unknown function
UHGV-0183302_23	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0183302_23	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0183302_23	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0183302_24	Pfam	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain	GlutR_dimer
UHGV-0183302_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183302_27	PHROG	phrog_16490	NA	unknown function
UHGV-0183302_27	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0183302_28	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0183302_29	eggNOG-mapper	476272.RUMHYD_01952	NA	NA
UHGV-0183302_30	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0183302_31	UniRef90	UniRef90_A0A6P1MDS2	Peptidase_C39_2 domain-containing protein	NA
UHGV-0183302_31	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0183302_31	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0183302_31	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0183302_32	PHROG	phrog_1048	NA	unknown function
UHGV-0183302_32	UniRef90	UniRef90_UPI0018AA3785	NA	NA
UHGV-0183302_32	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0183302_32	Pfam	PF11195	NA	DUF2829
UHGV-0183302_32	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0183302_32	Structural annotation	PF11195	NA	NA
UHGV-0183302_33	PHROG	phrog_13256	NA	unknown function
UHGV-0183302_33	eggNOG-mapper	1160721.RBI_I01912	NA	NA
UHGV-0183302_34	PHROG	phrog_4105	NA	unknown function
UHGV-0183302_36	PHROG	phrog_1382	NA	unknown function
UHGV-0183302_36	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0183302_36	Structural annotation	NF040910	NA	NA
UHGV-0183302_38	PHROG	phrog_5302	tail protein	tail
UHGV-0183302_38	UniRef90	UniRef90_R6M197	Ig-like_bact domain-containing protein	NA
UHGV-0183302_38	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0183302_38	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0183302_38	Structural annotation	PF07210, COG1262	NA	NA
UHGV-0183302_39	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0183302_42	eggNOG-mapper	445971.ANASTE_02357	NA	NA
UHGV-0183302_43	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0183302_43	UniRef90	UniRef90_UPI00106E8FF7	phage major capsid protein	NA
UHGV-0183302_43	eggNOG-mapper	445971.ANASTE_00901	NA	NA
UHGV-0183302_43	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0183302_43	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0183302_45	PHROG	phrog_156	portal protein	head and packaging
UHGV-0183302_45	eggNOG-mapper	445971.ANASTE_00955	NA	NA
UHGV-0183302_45	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0183302_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0183302_48	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0183302_48	eggNOG-mapper	588581.Cpap_1523	Terminase-like family	NA
UHGV-0183302_48	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0183302_48	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0183302_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0183302_49	UniRef90	UniRef90_A0A372UGR8	NA	NA