UHGV-0183318

Genome information

Genome length 53,877 bps

CDS count 91

Completeness 96.79% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183318
vOTU ID	vOTU-060781
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_596868
BioSample	NA
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.28
Jumbo phage	No

Genome content
Genome length	53,877 bps
GC content	37.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	90.18%
Average CDS length	536.57 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183318_1	PHROG	phrog_4433	NA	unknown function
UHGV-0183318_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0183318_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0183318_2	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0183318_2	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183318_2	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-0183318_2	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-0183318_2	Pfam	PF13476	AAA domain	AAA_23
UHGV-0183318_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0183318_2	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0183318_3	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183318_3	PHROG	phrog_26861	NA	unknown function
UHGV-0183318_3	UniRef90	UniRef90_R6LGA2	Single-strand binding family protein	NA
UHGV-0183318_3	eggNOG-mapper	469618.FVAG_01197	Single-stranded DNA-binding protein	NA
UHGV-0183318_3	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183318_3	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183318_3	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629, COG5569	NA	NA
UHGV-0183318_5	PHROG	phrog_32437	NA	unknown function
UHGV-0183318_5	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0183318_5	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0183318_5	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0183318_6	PHROG	phrog_4292	NA	unknown function
UHGV-0183318_6	eggNOG-mapper	397290.C810_01449	NA	NA
UHGV-0183318_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0183318_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0183318_7	UniRef90	UniRef90_A0A356C696	Bro-N domain-containing protein	NA
UHGV-0183318_7	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0183318_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0183318_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0183318_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0183318_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0183318_8	UniRef90	UniRef90_A0A8D9UIR6	DNA-binding transcriptional regulator	NA
UHGV-0183318_8	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0183318_8	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0183318_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183318_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183318_9	UniRef90	UniRef90_A0A8D9UIK2	HTH cro/C1-type domain-containing protein	NA
UHGV-0183318_9	eggNOG-mapper	1235790.C805_00362	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183318_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183318_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183318_9	Structural annotation	PF13560, NF041951, COG3655	NA	NA
UHGV-0183318_11	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0183318_11	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0183318_11	UniRef90	UniRef90_R6RRS4	LysM domain/M23/M37 peptidase domain protein	NA
UHGV-0183318_11	eggNOG-mapper	511680.BUTYVIB_00396	peptidase	NA
UHGV-0183318_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0183318_11	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0183318_11	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0183318_12	PHROG	phrog_6616	tail protein	tail
UHGV-0183318_12	eggNOG-mapper	1211844.CBLM010000023_gene978	cellulase activity	NA
UHGV-0183318_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0183318_13	PHROG	phrog_1401	NA	unknown function
UHGV-0183318_13	eggNOG-mapper	1415775.U729_2617	NA	NA
UHGV-0183318_13	Structural annotation	PF07761	NA	NA
UHGV-0183318_14	PHROG	phrog_1194	NA	unknown function
UHGV-0183318_14	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0183318_14	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0183318_15	PHROG	phrog_28918	NA	unknown function
UHGV-0183318_15	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0183318_15	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0183318_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0183318_17	PHROG	phrog_36112	NA	unknown function
UHGV-0183318_17	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0183318_17	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0183318_17	Structural annotation	PF11836	NA	NA
UHGV-0183318_18	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0183318_18	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0183318_19	Structural annotation	PF05657	NA	NA
UHGV-0183318_20	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0183318_21	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0183318_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0183318_22	PHROG	phrog_18218	NA	unknown function
UHGV-0183318_22	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0183318_22	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0183318_22	Structural annotation	PF06946	NA	NA
UHGV-0183318_23	PHROG	phrog_4105	NA	unknown function
UHGV-0183318_23	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0183318_24	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0183318_25	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0183318_25	Structural annotation	PF21169	NA	NA
UHGV-0183318_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0183318_26	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0183318_26	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0183318_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0183318_26	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0183318_27	PHROG	phrog_909	major head protein	head and packaging
UHGV-0183318_27	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0183318_28	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0183318_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0183318_29	UniRef90	UniRef90_R7BGE4	SPP1 family phage portal protein	NA
UHGV-0183318_29	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0183318_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0183318_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0183318_30	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0183318_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183318_31	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0183318_31	Structural annotation	PF02996	NA	NA
UHGV-0183318_32	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0183318_32	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0183318_32	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0183318_32	COG	COG5410	NA	NA
UHGV-0183318_32	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0183318_33	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0183318_33	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0183318_33	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0183318_37	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0183318_41	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0183318_41	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0183318_42	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0183318_42	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0183318_42	Structural annotation	PF16677	NA	NA
UHGV-0183318_44	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0183318_44	UniRef90	UniRef90_A0A415M7P1	XRE family transcriptional regulator	NA
UHGV-0183318_44	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0183318_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0183318_44	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0183318_49	PHROG	phrog_10678	NA	unknown function
UHGV-0183318_52	PHROG	phrog_1233	NA	unknown function
UHGV-0183318_52	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0183318_52	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0183318_52	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0183318_53	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0183318_54	PHROG	phrog_20016	NA	unknown function
UHGV-0183318_54	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0183318_54	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0183318_54	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183318_55	PHROG	phrog_16490	NA	unknown function
UHGV-0183318_55	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0183318_57	PHROG	phrog_21718	NA	unknown function
UHGV-0183318_57	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0183318_57	Structural annotation	NF033819	NA	NA
UHGV-0183318_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0183318_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0183318_59	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0183318_59	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0183318_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0183318_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0183318_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0183318_59	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0183318_61	UniRef90	UniRef90_A0A8D9PGK7	Response regulator	NA
UHGV-0183318_61	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0183318_61	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0183318_65	PHROG	phrog_17690	NA	unknown function
UHGV-0183318_65	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0183318_65	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0183318_66	PHROG	phrog_26324	DNA methyltransferase	other
UHGV-0183318_66	UniRef90	UniRef90_UPI001D094304	DNA cytosine methyltransferase	NA
UHGV-0183318_66	eggNOG-mapper	562981.HMPREF0428_01833	C-5 cytosine-specific DNA methylase	NA
UHGV-0183318_66	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0183318_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0183318_66	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183318_67	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0183318_67	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0183318_67	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0183318_67	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0183318_67	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0183318_67	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0183318_67	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0183318_67	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0183318_67	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0183318_72	PHROG	phrog_19106	NA	unknown function
UHGV-0183318_72	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0183318_72	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0183318_72	Structural annotation	TIGR01453	NA	NA
UHGV-0183318_74	PHROG	phrog_10714	NA	unknown function
UHGV-0183318_74	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0183318_74	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0183318_76	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0183318_76	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-0183318_76	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-0183318_76	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183318_76	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0183318_77	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183318_77	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183318_77	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0183318_77	eggNOG-mapper	515620.EUBELI_01955	Single-stranded DNA-binding protein	NA
UHGV-0183318_77	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183318_77	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183318_77	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183318_77	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183318_77	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0183318_79	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183318_79	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0183318_79	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0183318_79	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0183318_79	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183318_79	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0183318_80	PHROG	phrog_38832	NA	unknown function
UHGV-0183318_80	eggNOG-mapper	397290.C810_05184	NA	NA
UHGV-0183318_82	PHROG	phrog_7711	NA	unknown function
UHGV-0183318_82	eggNOG-mapper	1226322.HMPREF1545_00031	NA	NA
UHGV-0183318_83	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0183318_83	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0183318_83	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0183318_83	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0183318_83	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0183318_83	dbAPIS	APIS058	NA	NA
UHGV-0183318_83	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0183318_83	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0183318_84	PHROG	phrog_13999	NA	unknown function
UHGV-0183318_85	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0183318_85	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0183318_85	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0183318_85	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0183318_85	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0183318_85	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-0183318_86	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0183318_86	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0183318_86	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0183318_86	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0183318_86	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0183318_86	Structural annotation	PF01507, NF002537, COG0175	NA	NA
UHGV-0183318_87	PHROG	phrog_25456	NA	unknown function
UHGV-0183318_88	KOfam	K06940	NA	NA
UHGV-0183318_88	PHROG	phrog_32498	NA	unknown function
UHGV-0183318_88	UniRef90	UniRef90_A0A173SAY4	Flagellin N-methylase	NA
UHGV-0183318_88	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0183318_88	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0183318_90	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0183318_90	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0183318_90	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0183318_90	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0183318_90	Pfam	PF03837	RecT family	RecT
UHGV-0183318_90	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0183318_90	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0183318_90	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0183318_91	PHROG	phrog_27197	NA	unknown function
UHGV-0183318_91	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0183318_91	COG	COG5164	Transcription elongation factor SPT5	NA