UHGV-0183429

Genome information

Genome length 38,224 bps

CDS count 54

Completeness 76.17% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183429
vOTU ID	vOTU-029374
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_594441
BioSample	SAMN09781772
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.05
Jumbo phage	No

Genome content
Genome length	38,224 bps
GC content	36.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.53%
Average CDS length	658.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183429_1	PHROG	phrog_1909	NA	unknown function
UHGV-0183429_1	eggNOG-mapper	1458697.W6E8E8_9CAUD	NA	NA
UHGV-0183429_3	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0183429_3	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0183429_4	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0183429_4	PHROG	phrog_5696	NA	unknown function
UHGV-0183429_4	UniRef90	UniRef90_G5IHT0	N6_Mtase domain-containing protein	NA
UHGV-0183429_4	eggNOG-mapper	742733.HMPREF9469_05064	N-6 DNA Methylase	NA
UHGV-0183429_4	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0183429_4	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0183429_4	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0183429_4	Structural annotation	COG0286	NA	NA
UHGV-0183429_5	Structural annotation	PF18358	NA	NA
UHGV-0183429_7	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0183429_7	UniRef90	UniRef90_A0A7V3PBE5	Dna2/Cas4 domain-containing protein	NA
UHGV-0183429_7	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-0183429_7	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0183429_7	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0183429_8	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0183429_8	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0183429_8	UniRef90	UniRef90_UPI00195C3251	recombinase RecA	NA
UHGV-0183429_8	eggNOG-mapper	469616.FMAG_01147	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0183429_8	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0183429_8	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0183429_8	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0183429_9	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0183429_11	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0183429_11	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0183429_11	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0183429_11	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0183429_11	Pfam	PF02811	PHP domain	PHP
UHGV-0183429_11	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0183429_11	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0183429_11	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0183429_11	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0183429_11	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0183429_11	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0183429_12	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183429_12	Structural annotation	PF08804	NA	NA
UHGV-0183429_14	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0183429_14	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0183429_14	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0183429_14	eggNOG-mapper	1005057.BUAMB_052	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0183429_14	PADLOC	drt-UG29	DRT	DRT
UHGV-0183429_14	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0183429_14	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0183429_14	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0183429_14	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0183429_16	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0183429_18	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0183429_20	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0183429_21	PHROG	phrog_16490	NA	unknown function
UHGV-0183429_21	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0183429_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183429_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0183429_24	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0183429_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-0183429_27	UniRef90	UniRef90_UPI0005821E94	methyl-accepting chemotaxis protein	NA
UHGV-0183429_27	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0183429_27	Structural annotation	PF20747	NA	NA
UHGV-0183429_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0183429_28	UniRef90	UniRef90_UPI0015C5E26D	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0183429_28	eggNOG-mapper	1034347.CAHJ01000045_gene552	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0183429_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0183429_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0183429_29	PHROG	phrog_36410	NA	unknown function
UHGV-0183429_29	UniRef90	UniRef90_A0A6L3VAU7	Phage tail family protein	NA
UHGV-0183429_29	eggNOG-mapper	1033738.CAEP01000018_gene3683	Phage tail protein	NA
UHGV-0183429_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0183429_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0183429_30	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0183429_30	UniRef90	UniRef90_UPI0003B2F533	phage tail tape measure protein	NA
UHGV-0183429_30	eggNOG-mapper	1410670.JHXF01000015_gene2302	Phage tail tape measure protein, TP901 family	NA
UHGV-0183429_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0183429_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0183429_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0183429_30	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0183429_31	PHROG	phrog_6541	NA	unknown function
UHGV-0183429_32	PHROG	phrog_6280	NA	unknown function
UHGV-0183429_32	UniRef90	UniRef90_UPI0005425395	esterase	NA
UHGV-0183429_32	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0183429_33	PHROG	phrog_6686	tail tube protein	tail
UHGV-0183429_33	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0183429_33	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-0183429_33	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0183429_34	PHROG	phrog_7585	NA	unknown function
UHGV-0183429_34	eggNOG-mapper	445335.CBN_3080	NA	NA
UHGV-0183429_34	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0183429_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183429_35	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0183429_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0183429_35	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0183429_36	PHROG	phrog_8435	NA	unknown function
UHGV-0183429_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0183429_37	PHROG	phrog_4020	NA	unknown function
UHGV-0183429_37	eggNOG-mapper	1443122.Z958_05850	NA	NA
UHGV-0183429_38	Structural annotation	PF07498	NA	NA
UHGV-0183429_39	PHROG	phrog_29	major head protein	head and packaging
UHGV-0183429_39	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0183429_39	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0183429_39	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0183429_39	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0183429_40	PHROG	phrog_909	major head protein	head and packaging
UHGV-0183429_40	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0183429_40	Structural annotation	PF02924	NA	NA
UHGV-0183429_41	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0183429_41	eggNOG-mapper	1231057.AMGD01000018_gene3620	NA	NA
UHGV-0183429_41	Structural annotation	MF_02110	NA	NA
UHGV-0183429_43	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0183429_43	UniRef90	UniRef90_UPI001D0FF452	ADP-ribosyltransferase	NA
UHGV-0183429_43	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0183429_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0183429_44	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-0183429_44	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0183429_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0183429_45	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0183429_45	PHROG	phrog_7698	endolysin	lysis
UHGV-0183429_45	UniRef90	UniRef90_A0A1Y3SU28	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0183429_45	eggNOG-mapper	293826.Amet_2548	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0183429_45	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0183429_45	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0183429_45	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0183429_45	Structural annotation	PF01510, PF19127, MF_04111, TIGR04035, NF008758, COG5263, COG3023	NA	NA
UHGV-0183429_46	PHROG	phrog_443	holin	lysis
UHGV-0183429_46	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0183429_46	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0183429_46	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0183429_46	Structural annotation	PF16945	NA	NA
UHGV-0183429_48	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0183429_49	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0183429_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0183429_51	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0183429_51	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0183429_51	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0183429_51	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0183429_51	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0183429_51	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0183429_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-0183429_51	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0183429_53	PHROG	phrog_22292	NA	unknown function