UHGV-0183506

Genome information

Genome length 21,867 bps

CDS count 36

Completeness 58.76% (medium-quality)

geNomad score 0.9695

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183506
vOTU ID	vOTU-029380
vOTU representative	Yes
Source dataset	CHVD
Original genome ID	SAMEA2580137_a1_ct8441_vs1@Siphoviridae__sp._ctjt41
BioSample	SAMEA2580137
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9695
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-1.28
Jumbo phage	No

Genome content
Genome length	21,867 bps
GC content	60.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	88.85%
Average CDS length	542.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183506_1	KOfam	K12943	ygeR; lipoprotein YgeR	NA
UHGV-0183506_1	UniRef90	UniRef90_H1CLX3	Peptidase_M23 domain-containing protein	NA
UHGV-0183506_1	eggNOG-mapper	742738.HMPREF9460_02344	Peptidase family M23	NA
UHGV-0183506_1	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0183506_1	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0183506_2	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0183506_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0183506_2	UniRef90	UniRef90_A0A1C7FJR3	Integrase	NA
UHGV-0183506_2	eggNOG-mapper	742738.HMPREF9460_00840	Belongs to the 'phage' integrase family	NA
UHGV-0183506_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183506_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183506_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0183506_4	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0183506_4	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0183506_4	UniRef90	UniRef90_A0A174SR00	Putative mRNA interferase YoeB	NA
UHGV-0183506_4	eggNOG-mapper	742738.HMPREF9460_04033	YoeB-like toxin of bacterial type II toxin-antitoxin system	NA
UHGV-0183506_4	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0183506_4	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0183506_4	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0183506_4	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0183506_5	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0183506_5	PHROG	phrog_2737	NA	unknown function
UHGV-0183506_5	UniRef90	UniRef90_A0A1C7FJC0	DNA-damage-inducible protein J	NA
UHGV-0183506_5	eggNOG-mapper	742738.HMPREF9460_04034	RelB antitoxin	NA
UHGV-0183506_5	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0183506_5	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0183506_5	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0183506_5	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0183506_6	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0183506_6	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183506_6	UniRef90	UniRef90_H1CLX8	HSDR_N_2 domain-containing protein	NA
UHGV-0183506_6	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0183506_6	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0183506_6	COG	COG4748	NA	NA
UHGV-0183506_6	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0183506_7	PHROG	phrog_87	metallo-protease	other
UHGV-0183506_7	UniRef90	UniRef90_UPI001D022F2C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0183506_7	eggNOG-mapper	742738.HMPREF9460_04036	IrrE N-terminal-like domain	NA
UHGV-0183506_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0183506_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0183506_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183506_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183506_8	UniRef90	UniRef90_A0A6I2RMN8	HTH cro/C1-type domain-containing protein	NA
UHGV-0183506_8	eggNOG-mapper	742738.HMPREF9460_04037	Transcriptional	NA
UHGV-0183506_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183506_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0183506_8	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0183506_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183506_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183506_10	UniRef90	UniRef90_A0A096BCA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0183506_10	eggNOG-mapper	742738.HMPREF9460_04041	sequence-specific DNA binding	NA
UHGV-0183506_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183506_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183506_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0183506_11	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0183506_11	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0183506_11	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183506_11	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0183506_11	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0183506_11	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0183506_12	eggNOG-mapper	742738.HMPREF9460_00848	NA	NA
UHGV-0183506_12	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0183506_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183506_15	UniRef90	UniRef90_A0A2U1BBZ9	Helix-turn-helix protein	NA
UHGV-0183506_15	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0183506_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0183506_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183506_15	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0183506_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0183506_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0183506_16	UniRef90	UniRef90_A0A174FBN7	DNA helicase	NA
UHGV-0183506_16	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0183506_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0183506_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0183506_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0183506_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0183506_17	PHROG	phrog_27610	NA	unknown function
UHGV-0183506_18	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0183506_18	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0183506_18	UniRef90	UniRef90_A0A096BC44	AAA_31 domain-containing protein	NA
UHGV-0183506_18	eggNOG-mapper	742738.HMPREF9460_04050	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0183506_18	Pfam	PF13614	AAA domain	AAA_31
UHGV-0183506_18	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0183506_18	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0183506_19	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0183506_19	PHROG	phrog_27290	NA	unknown function
UHGV-0183506_19	UniRef90	UniRef90_A0A6N3FXV0	Nucleoid occlusion protein	NA
UHGV-0183506_19	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0183506_19	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0183506_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0183506_19	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0183506_20	PHROG	phrog_33866	NA	unknown function
UHGV-0183506_23	Structural annotation	NF000937	NA	NA
UHGV-0183506_24	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183506_24	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0183506_25	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0183506_25	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0183506_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183506_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183506_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0183506_27	AcrCatalog	cluster_32378	NA	NA
UHGV-0183506_29	PHROG	phrog_22389	NA	unknown function
UHGV-0183506_29	UniRef90	UniRef90_U2BZ19	NA	NA
UHGV-0183506_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183506_30	eggNOG-mapper	742738.HMPREF9460_04063	NA	NA
UHGV-0183506_30	Structural annotation	PF01446	NA	NA
UHGV-0183506_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183506_31	UniRef90	UniRef90_A0A6N3FVY9	HNH endonuclease	NA
UHGV-0183506_31	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0183506_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0183506_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183506_31	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0183506_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0183506_32	UniRef90	UniRef90_A0A6N3FW38	Phage terminase, small subunit	NA
UHGV-0183506_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0183506_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0183506_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183506_33	UniRef90	UniRef90_A0A6N3FX18	Phage Terminase	NA
UHGV-0183506_33	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0183506_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183506_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183506_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183506_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0183506_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183506_35	UniRef90	UniRef90_A0A6N3FYN1	Phage portal protein	NA
UHGV-0183506_35	eggNOG-mapper	742738.HMPREF9460_00874	Phage portal protein	NA
UHGV-0183506_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183506_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0183506_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183506_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183506_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0183506_36	UniRef90	UniRef90_K1UH90	Peptidase S14, ClpP (Fragment)	NA
UHGV-0183506_36	eggNOG-mapper	742738.HMPREF9460_00875	Clp protease	NA
UHGV-0183506_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0183506_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA