UHGV-0183513

Genome information

Genome length 34,739 bps

CDS count 51

Completeness 95.29% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183513
vOTU ID	vOTU-064806
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_598940
BioSample	NA
Country	Ethiopia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.34
Jumbo phage	No

Genome content
Genome length	34,739 bps
GC content	57.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.74%
Average CDS length	627.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183513_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183513_1	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-0183513_1	eggNOG-mapper	1203606.HMPREF1526_01332	HNH nucleases	NA
UHGV-0183513_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0183513_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183513_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0183513_2	UniRef90	UniRef90_UPI001C01192B	DNA adenine methylase	NA
UHGV-0183513_2	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0183513_2	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0183513_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0183513_2	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0183513_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183513_3	UniRef90	UniRef90_A0A6N8H4L3	Sigma70_r4 domain-containing protein	NA
UHGV-0183513_3	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0183513_3	Structural annotation	PF04545, TIGR02984	NA	NA
UHGV-0183513_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0183513_4	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0183513_4	UniRef90	UniRef90_A0A6N8H6R0	ParB domain-containing protein	NA
UHGV-0183513_4	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0183513_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0183513_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0183513_4	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0183513_5	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0183513_5	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0183513_5	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0183513_5	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0183513_5	Pfam	PF13614	AAA domain	AAA_31
UHGV-0183513_5	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0183513_5	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0183513_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0183513_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0183513_6	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-0183513_6	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0183513_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0183513_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0183513_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0183513_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0183513_7	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183513_7	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0183513_7	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0183513_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0183513_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183513_7	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0183513_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183513_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183513_8	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-0183513_8	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0183513_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183513_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183513_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183513_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183513_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0183513_9	PHROG	phrog_1029	NA	unknown function
UHGV-0183513_9	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0183513_9	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0183513_10	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0183513_10	UniRef90	UniRef90_UPI00137ABC30	replication terminator protein	NA
UHGV-0183513_10	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0183513_12	PHROG	phrog_7566	NA	unknown function
UHGV-0183513_12	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0183513_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0183513_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0183513_13	Pfam	PF05772	NinB protein	NinB
UHGV-0183513_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0183513_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0183513_15	PHROG	phrog_10280	NA	unknown function
UHGV-0183513_15	eggNOG-mapper	1235797.C816_01615	NA	NA
UHGV-0183513_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0183513_21	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0183513_21	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0183513_21	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-0183513_21	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0183513_21	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0183513_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183513_21	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183513_24	KOfam	K14059	int; integrase	NA
UHGV-0183513_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0183513_24	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0183513_24	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0183513_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0183513_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183513_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183513_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0183513_25	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0183513_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183513_27	PHROG	phrog_16490	NA	unknown function
UHGV-0183513_27	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0183513_30	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0183513_30	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0183513_31	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0183513_32	PHROG	phrog_1129	holin	lysis
UHGV-0183513_32	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0183513_32	eggNOG-mapper	742733.HMPREF9469_05010	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0183513_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0183513_32	Structural annotation	PF16079	NA	NA
UHGV-0183513_33	PHROG	phrog_1863	NA	unknown function
UHGV-0183513_33	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0183513_34	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0183513_34	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0183513_34	UniRef90	UniRef90_UPI001C034686	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0183513_34	eggNOG-mapper	665956.HMPREF1032_02708	NA	NA
UHGV-0183513_34	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0183513_34	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0183513_35	PHROG	phrog_5717	tail protein	tail
UHGV-0183513_35	eggNOG-mapper	553184.ATORI0001_0992	tail collar domain protein	NA
UHGV-0183513_35	COG	COG4675	Phage tail collar domain	NA
UHGV-0183513_35	Structural annotation	COG4675	NA	NA
UHGV-0183513_37	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0183513_38	PHROG	phrog_26795	NA	unknown function
UHGV-0183513_38	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0183513_38	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0183513_39	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0183513_39	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0183513_39	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-0183513_39	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0183513_40	PHROG	phrog_33680	NA	unknown function
UHGV-0183513_40	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0183513_40	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0183513_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0183513_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0183513_40	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0183513_41	Structural annotation	PF12363	NA	NA
UHGV-0183513_42	PHROG	phrog_88	major tail protein	tail
UHGV-0183513_42	eggNOG-mapper	927704.SELR_11340	NA	NA
UHGV-0183513_42	Structural annotation	PF06488, TIGR01603	NA	NA
UHGV-0183513_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183513_44	UniRef90	UniRef90_A5ZPL5	Phage protein, HK97 gp10 family	NA
UHGV-0183513_44	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0183513_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0183513_44	Structural annotation	TIGR01725	NA	NA
UHGV-0183513_45	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0183513_45	UniRef90	UniRef90_UPI00195B41A2	phage head closure protein	NA
UHGV-0183513_45	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0183513_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0183513_46	PHROG	phrog_5223	neck protein	connector
UHGV-0183513_46	UniRef90	UniRef90_A0A3B8U278	DNA-packaging protein	NA
UHGV-0183513_46	eggNOG-mapper	573061.Clocel_2435	NA	NA
UHGV-0183513_46	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0183513_47	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183513_47	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0183513_47	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0183513_47	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183513_47	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183513_47	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183513_47	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183513_48	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0183513_48	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0183513_48	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0183513_48	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0183513_48	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0183513_48	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0183513_48	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0183513_49	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183513_49	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-0183513_49	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0183513_49	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183513_49	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183513_49	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183513_50	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183513_50	UniRef90	UniRef90_C4GAS7	Putative phage terminase, large subunit	NA
UHGV-0183513_50	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0183513_50	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183513_50	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183513_50	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183513_50	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0183513_51	PHROG	phrog_1066	NA	unknown function
UHGV-0183513_51	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0183513_51	Structural annotation	PF05119, TIGR01558	NA	NA