UHGV-0183656

Genome information

Genome length 35,182 bps

CDS count 50

Completeness 93.36% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0183656
vOTU ID	vOTU-065323
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_595563
BioSample	SAMN09781757
Country	Madagascar
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.33
Jumbo phage	No

Genome content
Genome length	35,182 bps
GC content	57.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.50%
Average CDS length	638.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0183656_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0183656_1	UniRef90	UniRef90_UPI0009FDA1CA	HNH endonuclease	NA
UHGV-0183656_1	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0183656_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0183656_2	PHROG	phrog_21498	NA	unknown function
UHGV-0183656_2	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0183656_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0183656_2	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0183656_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0183656_3	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0183656_3	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0183656_3	Structural annotation	PF07374, MF_00245, TIGR02980, COG2739	NA	NA
UHGV-0183656_4	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0183656_4	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0183656_4	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0183656_4	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0183656_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0183656_4	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0183656_4	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0183656_5	eggNOG-mapper	706433.HMPREF9430_01279	NA	NA
UHGV-0183656_5	Structural annotation	PF12643, MF_01020, NF001610, COG0140	NA	NA
UHGV-0183656_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0183656_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0183656_6	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0183656_6	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0183656_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-0183656_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0183656_6	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0183656_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0183656_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0183656_7	UniRef90	UniRef90_D1PNB9	DNA helicase	NA
UHGV-0183656_7	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0183656_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0183656_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0183656_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0183656_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0183656_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0183656_8	UniRef90	UniRef90_UPI000F632BBD	helix-turn-helix domain-containing protein	NA
UHGV-0183656_8	eggNOG-mapper	862514.HMPREF0623_0270	Helix-turn-helix domain	NA
UHGV-0183656_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0183656_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0183656_8	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0183656_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0183656_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0183656_9	UniRef90	UniRef90_A0A6N8H0I4	Single-stranded DNA-binding protein	NA
UHGV-0183656_9	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0183656_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0183656_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0183656_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0183656_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0183656_9	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0183656_10	PHROG	phrog_1029	NA	unknown function
UHGV-0183656_10	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0183656_10	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0183656_11	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0183656_11	UniRef90	UniRef90_A0A2Z3KP46	Replication terminator protein	NA
UHGV-0183656_11	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0183656_12	PHROG	phrog_7566	NA	unknown function
UHGV-0183656_12	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0183656_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0183656_13	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0183656_13	Pfam	PF05772	NinB protein	NinB
UHGV-0183656_13	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0183656_14	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0183656_14	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0183656_15	PHROG	phrog_10280	NA	unknown function
UHGV-0183656_15	eggNOG-mapper	903814.ELI_0195	NA	NA
UHGV-0183656_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0183656_16	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0183656_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0183656_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0183656_19	UniRef90	UniRef90_A0A7G5MY84	XRE family transcriptional regulator	NA
UHGV-0183656_19	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0183656_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0183656_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0183656_19	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0183656_21	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0183656_21	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0183656_21	UniRef90	UniRef90_A0A1Y3SB26	Exonuclease domain-containing protein	NA
UHGV-0183656_21	eggNOG-mapper	1203606.HMPREF1526_00999	EXOIII	NA
UHGV-0183656_21	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0183656_21	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0183656_21	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0183656_21	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0183656_22	KOfam	K14059	int; integrase	NA
UHGV-0183656_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0183656_22	UniRef90	UniRef90_UPI00195B6EEA	site-specific integrase	NA
UHGV-0183656_22	eggNOG-mapper	1235797.C816_00779	Phage integrase family	NA
UHGV-0183656_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0183656_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0183656_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0183656_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0183656_23	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0183656_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0183656_25	PHROG	phrog_16490	NA	unknown function
UHGV-0183656_25	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0183656_28	eggNOG-mapper	78345.BMERY_0692	NA	NA
UHGV-0183656_28	Structural annotation	PF07825, NF040990, COG3311	NA	NA
UHGV-0183656_29	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0183656_29	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0183656_30	PHROG	phrog_1129	holin	lysis
UHGV-0183656_30	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0183656_30	eggNOG-mapper	411460.RUMTOR_01325	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0183656_30	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0183656_30	Structural annotation	PF16079	NA	NA
UHGV-0183656_31	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0183656_32	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0183656_32	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0183656_32	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0183656_32	eggNOG-mapper	1120746.CCNL01000017_gene3150	Peptidase family M23	NA
UHGV-0183656_32	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0183656_32	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0183656_32	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0183656_34	UniRef90	UniRef90_A0A1C5MZC0	NA	NA
UHGV-0183656_34	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0183656_34	Pfam	PF19789	NA	DUF6273
UHGV-0183656_34	Structural annotation	PF19789	NA	NA
UHGV-0183656_35	UniRef90	UniRef90_UPI000C79F998	H-type lectin domain-containing protein	NA
UHGV-0183656_35	Structural annotation	PF10651, NF041074	NA	NA
UHGV-0183656_36	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0183656_36	UniRef90	UniRef90_A0A413DNC1	Prophage_tail domain-containing protein	NA
UHGV-0183656_36	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0183656_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0183656_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0183656_36	COG	COG4926	Phage-related protein	NA
UHGV-0183656_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0183656_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0183656_37	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0183656_37	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0183656_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0183656_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0183656_38	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0183656_38	UniRef90	UniRef90_A0A318EW70	TP901 family phage tail tape measure protein	NA
UHGV-0183656_38	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0183656_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0183656_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0183656_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0183656_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0183656_39	PHROG	phrog_3033	NA	unknown function
UHGV-0183656_39	eggNOG-mapper	1280671.AUJH01000012_gene3142	NA	NA
UHGV-0183656_40	PHROG	phrog_709	NA	unknown function
UHGV-0183656_40	eggNOG-mapper	411471.SUBVAR_05858	NA	NA
UHGV-0183656_40	Structural annotation	PF11836	NA	NA
UHGV-0183656_41	PHROG	phrog_88	major tail protein	tail
UHGV-0183656_41	UniRef90	UniRef90_UPI00195648EE	phage tail protein	NA
UHGV-0183656_41	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0183656_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0183656_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0183656_42	eggNOG-mapper	1304866.K413DRAFT_1230	NA	NA
UHGV-0183656_42	Structural annotation	PF20765	NA	NA
UHGV-0183656_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0183656_43	UniRef90	UniRef90_UPI0006C82A14	HK97 gp10 family phage protein	NA
UHGV-0183656_43	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0183656_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0183656_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0183656_44	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0183656_44	UniRef90	UniRef90_D1PND3	Putative phage head-tail adaptor	NA
UHGV-0183656_44	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-0183656_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0183656_45	PHROG	phrog_5223	neck protein	connector
UHGV-0183656_45	UniRef90	UniRef90_A0A6N8H2B4	DNA-packaging protein	NA
UHGV-0183656_45	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0183656_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0183656_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0183656_46	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0183656_46	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0183656_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0183656_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0183656_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0183656_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0183656_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0183656_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0183656_47	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0183656_47	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0183656_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0183656_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0183656_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0183656_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-0183656_48	UniRef90	UniRef90_A0A3B8U1I5	Phage portal protein	NA
UHGV-0183656_48	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0183656_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0183656_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0183656_48	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0183656_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0183656_49	UniRef90	UniRef90_C4GAS7	Putative phage terminase, large subunit	NA
UHGV-0183656_49	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0183656_49	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0183656_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0183656_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0183656_49	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0183656_50	PHROG	phrog_1066	NA	unknown function
UHGV-0183656_50	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0183656_50	Structural annotation	PF05119, TIGR01558	NA	NA